Literature DB >> 15805597

Synchrotron X-ray powder diffraction study of hexagonal turkey egg-white lysozyme.

Irene Margiolaki1, Jonathan P Wright, Andrew N Fitch, Gavin C Fox, Robert B Von Dreele.   

Abstract

The structure of turkey egg-white lysozyme (TEWL) has been refined from high-resolution X-ray powder diffraction data. The sample was rapidly obtained as a polycrystalline precipitate at high protein concentration using 0.5 M NaCl solvent pH 6 and was deposited in the PDB with code 1xft. The diffraction data were collected at room temperature. Molecular replacement was shown to give a suitable starting point for refinement, illustrating that powder data can be sufficient for this approach. Crystallographic models were then refined by combined Rietveld and stereochemical restraint analysis of the powder data (d(min) = 3.35 A), resulting in the extraction of reliable lattice parameters and the refinement of the molecular conformation at room temperature. The structure is hexagonal [space group P6(1)22, unit-cell parameters a = 71.0862 (3), c = 85.0276 (5) A] with 12 symmetry-related molecules in the unit cell, in agreement with previous studies. The results of our analysis are indicative of specific amino acids being disordered at this temperature. Upon cooling, a sudden drop in the lattice parameters at approximately 250 K is observed concurrently with the freezing of the mother liquor. The observation of severe peak broadening below this temperature indicates strain effects accompanying the freezing transition, which are found to be reversible. Finally, a correlation between the unit-cell parameters and the pH of the buffer solution is evident, in a similar manner to earlier observations on HEWL.

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Year:  2005        PMID: 15805597     DOI: 10.1107/S0907444905001393

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  5 in total

1.  A new approach for structure analysis of two-dimensional membrane protein crystals using X-ray powder diffraction data.

Authors:  R A Dilanian; C Darmanin; J N Varghese; S W Wilkins; T Oka; N Yagi; H M Quiney; K A Nugent
Journal:  Protein Sci       Date:  2011-01-18       Impact factor: 6.725

2.  Coxsackievirus B3 protease 3C: expression, purification, crystallization and preliminary structural insights.

Authors:  Stavroula Fili; Alexandros Valmas; Magdalini Christopoulou; Maria Spiliopoulou; Nikos Nikolopoulos; Julie Lichière; Souzana Logotheti; Fotini Karavassili; Eleftheria Rosmaraki; Andrew Fitch; Jonathan Wright; Detlef Beckers; Thomas Degen; Gwilherm Nénert; Rolf Hilgenfeld; Nicolas Papageorgiou; Bruno Canard; Bruno Coutard; Irene Margiolaki
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-11-25       Impact factor: 1.056

3.  The MYTHEN detector for X-ray powder diffraction experiments at the Swiss Light Source.

Authors:  Anna Bergamaschi; Antonio Cervellino; Roberto Dinapoli; Fabia Gozzo; Beat Henrich; Ian Johnson; Philipp Kraft; Aldo Mozzanica; Bernd Schmitt; Xintian Shi
Journal:  J Synchrotron Radiat       Date:  2010-07-22       Impact factor: 2.616

4.  Exploiting powder X-ray diffraction for direct structure determination in structural biology: the P2X4 receptor trafficking motif YEQGL.

Authors:  Kotaro Fujii; Mark T Young; Kenneth D M Harris
Journal:  J Struct Biol       Date:  2011-03-05       Impact factor: 2.867

Review 5.  In Quest for Improved Drugs against Diabetes: The Added Value of X-ray Powder Diffraction Methods.

Authors:  Fotini Karavassili; Alexandros Valmas; Stavroula Fili; Christos D Georgiou; Irene Margiolaki
Journal:  Biomolecules       Date:  2017-08-22
  5 in total

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