Literature DB >> 15802265

Glutamate 636 of the Escherichia coli pyruvate dehydrogenase-E1 participates in active center communication and behaves as an engineered acetolactate synthase with unusual stereoselectivity.

Natalia Nemeria1, Kai Tittmann, Ebenezer Joseph, Leon Zhou, Michelle B Vazquez-Coll, Palaniappa Arjunan, Gerhard Hübner, William Furey, Frank Jordan.   

Abstract

The residue Glu636 is located near the thiamine diphosphate (ThDP) binding site of the Escherichia coli pyruvate dehydrogenase complex E1 subunit (PDHc-E1), and to probe its function two variants, E636A and E636Q were created with specific activities of 2.5 and 26% compared with parental PDHc-E1. According to both fluorescence binding and kinetic assays, the E636A variant behaved according to half-of-the-sites mechanism with respect to ThDP. In contrast, with the E636Q variant a K(d,ThDP) = 4.34 microM and K(m,ThDP) = 11 microM were obtained with behavior more reminiscent of the parental enzyme. The CD spectra of both variants gave evidence for formation of the 1',4'-iminopyrimidine tautomer on binding of phosphonolactylthiamine diphosphate, a stable analog of the substrate-ThDP covalent complex. Rapid formation of optically active (R)-acetolactate by both variants, but not by the parental enzyme, was observed by CD and NMR spectroscopy. The acetolactate configuration produced by the Glu636 variants is opposite that produced by the enzyme acetolactate synthase and the Asp28-substituted variants of yeast pyruvate decarboxylase, suggesting that the active centers of the two sets of enzymes exhibit different facial selectivity (re or si) vis à vis pyruvate. The tryptic peptide map (mass spectral analysis) revealed that the Glu636 substitution changed the mobility of a loop comprising amino acid residues from the ThDP binding fold. Apparently, the residue Glu636 has important functions both in active center communication and in protecting the active center from undesirable "carboligase" side reactions.

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Year:  2005        PMID: 15802265     DOI: 10.1074/jbc.M502691200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  14 in total

1.  Bifunctionality of the thiamin diphosphate cofactor: assignment of tautomeric/ionization states of the 4'-aminopyrimidine ring when various intermediates occupy the active sites during the catalysis of yeast pyruvate decarboxylase.

Authors:  Anand Balakrishnan; Yuhong Gao; Prerna Moorjani; Natalia S Nemeria; Kai Tittmann; Frank Jordan
Journal:  J Am Chem Soc       Date:  2012-02-17       Impact factor: 15.419

2.  Efficient coupling of catalysis and dynamics in the E1 component of Escherichia coli pyruvate dehydrogenase multienzyme complex.

Authors:  Sachin Kale; Gözde Ulas; Jaeyoung Song; Gary W Brudvig; William Furey; Frank Jordan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

3.  Conformational ensemble modulates cooperativity in the rate-determining catalytic step in the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex.

Authors:  Sachin Kale; Frank Jordan
Journal:  J Biol Chem       Date:  2009-09-29       Impact factor: 5.157

Review 4.  The pyruvate dehydrogenase complexes: structure-based function and regulation.

Authors:  Mulchand S Patel; Natalia S Nemeria; William Furey; Frank Jordan
Journal:  J Biol Chem       Date:  2014-05-05       Impact factor: 5.157

5.  Assignment of function to histidines 260 and 298 by engineering the E1 component of the Escherichia coli 2-oxoglutarate dehydrogenase complex; substitutions that lead to acceptance of substrates lacking the 5-carboxyl group.

Authors:  Da Jeong Shim; Natalia S Nemeria; Anand Balakrishnan; Hetalben Patel; Jaeyoung Song; Junjie Wang; Frank Jordan; Edgardo T Farinas
Journal:  Biochemistry       Date:  2011-08-10       Impact factor: 3.162

6.  Acetylphosphinate is the most potent mechanism-based substrate-like inhibitor of both the human and Escherichia coli pyruvate dehydrogenase components of the pyruvate dehydrogenase complex.

Authors:  Natalia S Nemeria; Lioubov G Korotchkina; Sumit Chakraborty; Mulchand S Patel; Frank Jordan
Journal:  Bioorg Chem       Date:  2006-10-27       Impact factor: 5.275

7.  Probing the active center of benzaldehyde lyase with substitutions and the pseudosubstrate analogue benzoylphosphonic acid methyl ester.

Authors:  Gabriel S Brandt; Natalia Nemeria; Sumit Chakraborty; Michael J McLeish; Alejandra Yep; George L Kenyon; Gregory A Petsko; Frank Jordan; Dagmar Ringe
Journal:  Biochemistry       Date:  2008-06-21       Impact factor: 3.162

8.  Snapshot of a reaction intermediate: analysis of benzoylformate decarboxylase in complex with a benzoylphosphonate inhibitor.

Authors:  Gabriel S Brandt; Malea M Kneen; Sumit Chakraborty; Ahmet T Baykal; Natalia Nemeria; Alejandra Yep; David I Ruby; Gregory A Petsko; George L Kenyon; Michael J McLeish; Frank Jordan; Dagmar Ringe
Journal:  Biochemistry       Date:  2009-04-21       Impact factor: 3.162

9.  Catalysis in Enzymatic Decarboxylations: Comparison of Selected Cofactor-dependent and Cofactor-independent Examples.

Authors:  Frank Jordan; Hetalben Patel
Journal:  ACS Catal       Date:  2013-07-05       Impact factor: 13.084

10.  Influence of allosteric regulators on individual steps in the reaction catalyzed by Mycobacterium tuberculosis 2-hydroxy-3-oxoadipate synthase.

Authors:  Anand Balakrishnan; Frank Jordan; Carl F Nathan
Journal:  J Biol Chem       Date:  2013-06-11       Impact factor: 5.157

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