Literature DB >> 15799953

Evaluating real-life high-throughput screening data.

Philip Gribbon1, Richard Lyons, Philip Laflin, Joe Bradley, Chris Chambers, Bruce S Williams, Wilma Keighley, Andreas Sewing.   

Abstract

High-throughput screening (HTS) is the result of a concerted effort of chemistry, biology, information technology, and engineering. Many factors beyond the biology of the assay influence the quality and outcome of the screening process, yet data analysis and quality control are often focused on the analysis of a limited set of control wells and the calculated values derived from these wells. Taking into account the large number of variables and the amount of data generated, multiple views of the screening data are necessary to guarantee quality and validity of HTS results. This article does not aim to give an exhaustive outlook on HTS data analysis but tries to illustrate the shortfalls of a reductionist approach focused on control wells and give examples for further analysis.

Mesh:

Year:  2005        PMID: 15799953     DOI: 10.1177/1087057104271957

Source DB:  PubMed          Journal:  J Biomol Screen        ISSN: 1087-0571


  13 in total

1.  Quantitative high-throughput screening: a titration-based approach that efficiently identifies biological activities in large chemical libraries.

Authors:  James Inglese; Douglas S Auld; Ajit Jadhav; Ronald L Johnson; Anton Simeonov; Adam Yasgar; Wei Zheng; Christopher P Austin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

2.  Comprehensive mechanistic analysis of hits from high-throughput and docking screens against beta-lactamase.

Authors:  Kerim Babaoglu; Anton Simeonov; John J Irwin; Michael E Nelson; Brian Feng; Craig J Thomas; Laura Cancian; M Paola Costi; David A Maltby; Ajit Jadhav; James Inglese; Christopher P Austin; Brian K Shoichet
Journal:  J Med Chem       Date:  2008-03-12       Impact factor: 7.446

3.  Use of label-free optical biosensors to detect modulation of potassium channels by G-protein coupled receptors.

Authors:  Matthew R Fleming; Steven M Shamah; Leonard K Kaczmarek
Journal:  J Vis Exp       Date:  2014-02-10       Impact factor: 1.355

4.  Extracting SAR Information from a Large Collection of Anti-Malarial Screening Hits by NSG-SPT Analysis.

Authors:  Mathias Wawer; Jürgen Bajorath
Journal:  ACS Med Chem Lett       Date:  2011-01-05       Impact factor: 4.345

5.  An informatic pipeline for managing high-throughput screening experiments and analyzing data from stereochemically diverse libraries.

Authors:  Carol A Mulrooney; David L Lahr; Michael J Quintin; Willmen Youngsaye; Dennis Moccia; Jacob K Asiedu; Evan L Mulligan; Lakshmi B Akella; Lisa A Marcaurelle; Philip Montgomery; Joshua A Bittker; Paul A Clemons; Stephen Brudz; Sivaraman Dandapani; Jeremy R Duvall; Nicola J Tolliday; Andrea De Souza
Journal:  J Comput Aided Mol Des       Date:  2013-04-13       Impact factor: 3.686

6.  Paclitaxel is an inhibitor and its boron dipyrromethene derivative is a fluorescent recognition agent for botulinum neurotoxin subtype A.

Authors:  Saedeh Dadgar; Zack Ramjan; Wely B Floriano
Journal:  J Med Chem       Date:  2013-03-29       Impact factor: 7.446

7.  Challenges in secondary analysis of high throughput screening data.

Authors:  Aurora S Blucher; Shannon K McWeeney
Journal:  Pac Symp Biocomput       Date:  2014

8.  A miniaturized glucocorticoid receptor translocation assay using enzymatic fragment complementation evaluated with qHTS.

Authors:  Ping Jun Zhu; Wei Zheng; Douglas S Auld; Ajit Jadhav; Ryan Macarthur; Keith R Olson; Kun Peng; Hyna Dotimas; Christopher P Austin; James Inglese
Journal:  Comb Chem High Throughput Screen       Date:  2008-08       Impact factor: 1.339

9.  High-throughput secondary screening at the single-cell level.

Authors:  J Paul Robinson; Valery Patsekin; Cheryl Holdman; Kathy Ragheb; Jennifer Sturgis; Ray Fatig; Larisa V Avramova; Bartek Rajwa; V Jo Davisson; Nicole Lewis; Padma Narayanan; Nianyu Li; C W Qualls
Journal:  J Lab Autom       Date:  2012-09-10

10.  GUItars: a GUI tool for analysis of high-throughput RNA interference screening data.

Authors:  Asli N Goktug; Su Sien Ong; Taosheng Chen
Journal:  PLoS One       Date:  2012-11-20       Impact factor: 3.240

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