Literature DB >> 15799715

Electrostatic stabilization in a pre-organized polar active site: the catalytic role of Lys-80 in Candida tenuis xylose reductase (AKR2B5) probed by site-directed mutagenesis and functional complementation studies.

Regina Kratzer1, Bernd Nidetzky.   

Abstract

Lys-80 of Candida tenuis xylose reductase (AKR2B5) is conserved throughout the aldo-keto reductase protein superfamily and may prime the nearby Tyr-51 for general acid catalysis to NAD(P)H-dependent carbonyl group reduction. We have examined the catalytic significance of side-chain substitutions in two AKR2B5 mutants, Lys-80-->Ala (K80A) and Asp-46-->Asn Lys-80-->Ala (D46N K80A), using steady-state kinetic analysis and restoration of activity with external amines. Binding of NAD+ (Kd = 24 microM) and NADP+ (Kd = 0.03 microM) was 10- and 40-fold tighter in K80A than the wild-type enzyme, whereas binding of NADH (Kd = 51 microM) and NADPH (Kd = 19 microM) was weakened 2- and 16-fold in this mutant respectively. D46N K80A bound NAD(P)H and NAD(P)+ uniformly approx. 5-fold less tightly than the wild-type enzyme. The second-order rate constant for non-covalent restoration of NADH-dependent reductase activity (kmax/Kamine) by protonated ethylamine was 0.11 M(-1).s(-1) for K80A, whereas no detectable rescue occurred for D46N K80A. After correction for effects of side-chain hydrophobicity, we obtained a linear free energy relationship of log (kmax/Kamine) and amine group pKa (slope = +0.29; r2 = 0.93) at pH 7.0. pH profiles of log (kcat/Km) for carbonyl group reduction by wild-type and D46N K80A revealed identical and kinetically unperturbed pKa values of 8.50 (+/-0.20). Therefore the protonated side chain of Lys-80 is not an essential activator of general acid catalysis by AKR2B5. Stabilized structurally through the salt-link interaction with the negatively charged Asp-46, it is proposed to pull the side chain of Tyr-51 into the catalytic position, leading to a preorganized polar environment of overall neutral charge, in which approximation of uncharged reactive groups is favoured and thus hydride transfer from NAD(P)H is strongly preferred. Lys-80 affects further the directional preference of AKR2B5 for NAD(P)H-dependent reduction by increasing NAD(P)H compared with NAD(P)+-binding selectivity.

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Year:  2005        PMID: 15799715      PMCID: PMC1175129          DOI: 10.1042/BJ20050167

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  33 in total

Review 1.  Electrostatic origin of the catalytic power of enzymes and the role of preorganized active sites.

Authors:  A Warshel
Journal:  J Biol Chem       Date:  1998-10-16       Impact factor: 5.157

2.  Computer simulations of enzyme catalysis: finding out what has been optimized by evolution.

Authors:  A Warshel; J Florián
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

Review 3.  Comparative anatomy of the aldo-keto reductase superfamily.

Authors:  J M Jez; M J Bennett; B P Schlegel; M Lewis; T M Penning
Journal:  Biochem J       Date:  1997-09-15       Impact factor: 3.857

4.  Identification of active site residues in E. coli ketopantoate reductase by mutagenesis and chemical rescue.

Authors:  R Zheng; J S Blanchard
Journal:  Biochemistry       Date:  2000-12-26       Impact factor: 3.162

5.  Mutagenesis of 3 alpha-hydroxysteroid dehydrogenase reveals a "push-pull" mechanism for proton transfer in aldo-keto reductases.

Authors:  B P Schlegel; J M Jez; T M Penning
Journal:  Biochemistry       Date:  1998-03-10       Impact factor: 3.162

6.  Human aldose reductase: rate constants for a mechanism including interconversion of ternary complexes by recombinant wild-type enzyme.

Authors:  C E Grimshaw; K M Bohren; C J Lai; K H Gabbay
Journal:  Biochemistry       Date:  1995-11-07       Impact factor: 3.162

7.  Engineering steroid 5 beta-reductase activity into rat liver 3 alpha-hydroxysteroid dehydrogenase.

Authors:  J M Jez; T M Penning
Journal:  Biochemistry       Date:  1998-07-07       Impact factor: 3.162

8.  Mechanism of human aldehyde reductase: characterization of the active site pocket.

Authors:  O A Barski; K H Gabbay; C E Grimshaw; K M Bohren
Journal:  Biochemistry       Date:  1995-09-05       Impact factor: 3.162

9.  Probing the active site of human aldose reductase. Site-directed mutagenesis of Asp-43, Tyr-48, Lys-77, and His-110.

Authors:  I Tarle; D W Borhani; D K Wilson; F A Quiocho; J M Petrash
Journal:  J Biol Chem       Date:  1993-12-05       Impact factor: 5.157

Review 10.  Short-chain dehydrogenases/reductases (SDR).

Authors:  H Jörnvall; B Persson; M Krook; S Atrian; R Gonzàlez-Duarte; J Jeffery; D Ghosh
Journal:  Biochemistry       Date:  1995-05-09       Impact factor: 3.162

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  3 in total

1.  Probing the substrate binding site of Candida tenuis xylose reductase (AKR2B5) with site-directed mutagenesis.

Authors:  Regina Kratzer; Stefan Leitgeb; David K Wilson; Bernd Nidetzky
Journal:  Biochem J       Date:  2006-01-01       Impact factor: 3.857

2.  Structure and catalytic mechanism of human steroid 5beta-reductase (AKR1D1).

Authors:  Luigi Di Costanzo; Jason E Drury; David W Christianson; Trevor M Penning
Journal:  Mol Cell Endocrinol       Date:  2008-09-19       Impact factor: 4.102

3.  Characterization of d-xylose reductase, XyrB, from Aspergillus niger.

Authors:  Agata Terebieniec; Tania Chroumpi; Adiphol Dilokpimol; Maria Victoria Aguilar-Pontes; Miia R Mäkelä; Ronald P de Vries
Journal:  Biotechnol Rep (Amst)       Date:  2021-03-15
  3 in total

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