Literature DB >> 15799061

Mathematical framework for simulating diffusion tensor MR neural fiber bundles.

A Leemans1, J Sijbers, M Verhoye, A Van der Linden, D Van Dyck.   

Abstract

White matter (WM) fiber tractography (i.e., the reconstruction of the 3D architecture of WM fiber pathways) is known to be an important application of diffusion tensor magnetic resonance imaging (DT-MRI). For the quantitative evaluation of several fiber-tracking properties, such as accuracy, noise sensitivity, and robustness, synthetic ground-truth DT-MRI data are required. Moreover, an accurate simulated phantom is also required for optimization of the user-defined tractography parameters, and objective comparisons between fiber-tracking algorithms. Therefore, in this study a mathematical framework for simulating DT-MRI data, based on the physical properties of WM fiber bundles, is presented. We obtained a model of a WM fiber bundle by parameterizing the various features that characterize this bundle. We then evaluated three different synthetic DT-MRI models using experimental data in order to test the proposed methodology, and to determine the optimum model and parameter settings for constructing a realistic simulated DT-MRI phantom. Several examples of how the mathematical framework can be applied to compare fiber-tracking algorithms are presented. Copyright 2005 Wiley-Liss, Inc.

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Year:  2005        PMID: 15799061     DOI: 10.1002/mrm.20418

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   4.668


  22 in total

1.  An ex vivo imaging pipeline for producing high-quality and high-resolution diffusion-weighted imaging datasets.

Authors:  Tim B Dyrby; William F C Baaré; Daniel C Alexander; Jacob Jelsing; Ellen Garde; Lise V Søgaard
Journal:  Hum Brain Mapp       Date:  2011-04       Impact factor: 5.038

2.  Quantitative diffusion tensor imaging in amyotrophic lateral sclerosis: revisited.

Authors:  Caroline A Sage; Wim Van Hecke; Ronald Peeters; Jan Sijbers; Wim Robberecht; Paul Parizel; Guy Marchal; Alexander Leemans; Stefan Sunaert
Journal:  Hum Brain Mapp       Date:  2009-11       Impact factor: 5.038

3.  Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging.

Authors:  Ben Jeurissen; Alexander Leemans; Jacques-Donald Tournier; Derek K Jones; Jan Sijbers
Journal:  Hum Brain Mapp       Date:  2012-05-19       Impact factor: 5.038

4.  Probabilistic fiber tracking using the residual bootstrap with constrained spherical deconvolution.

Authors:  Ben Jeurissen; Alexander Leemans; Derek K Jones; Jacques-Donald Tournier; Jan Sijbers
Journal:  Hum Brain Mapp       Date:  2011-03       Impact factor: 5.038

5.  Kernel regression estimation of fiber orientation mixtures in diffusion MRI.

Authors:  Ryan P Cabeen; Mark E Bastin; David H Laidlaw
Journal:  Neuroimage       Date:  2015-12-09       Impact factor: 6.556

6.  Tracking and validation techniques for topographically organized tractography.

Authors:  Dogu Baran Aydogan; Yonggang Shi
Journal:  Neuroimage       Date:  2018-07-02       Impact factor: 6.556

7.  When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity.

Authors:  Dogu Baran Aydogan; Russell Jacobs; Stephanie Dulawa; Summer L Thompson; Maite Christi Francois; Arthur W Toga; Hongwei Dong; James A Knowles; Yonggang Shi
Journal:  Brain Struct Funct       Date:  2018-04-16       Impact factor: 3.270

Review 8.  Diffusion tensor imaging and beyond.

Authors:  Jacques-Donald Tournier; Susumu Mori; Alexander Leemans
Journal:  Magn Reson Med       Date:  2011-04-05       Impact factor: 4.668

9.  Cellular-level diffusion tensor microscopy and fiber tracking in mammalian nervous tissue with direct histological correlation.

Authors:  Jeremy J Flint; Brian Hansen; Michael Fey; Daniel Schmidig; Michael A King; Peter Vestergaard-Poulsen; Stephen J Blackband
Journal:  Neuroimage       Date:  2010-04-18       Impact factor: 6.556

10.  Trade-off between angular and spatial resolutions in in vivo fiber tractography.

Authors:  Sjoerd B Vos; Murat Aksoy; Zhaoying Han; Samantha J Holdsworth; Julian Maclaren; Max A Viergever; Alexander Leemans; Roland Bammer
Journal:  Neuroimage       Date:  2016-01-14       Impact factor: 6.556

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