Literature DB >> 15797615

Modular genes with metazoan-specific domains have increased tissue specificity.

Inbar Cohen-Gihon1, Doron Lancet, Itai Yanai.   

Abstract

We have systematically examined the domain composition across a comprehensive set of tissue-specific, midrange and housekeeping genes as defined by their mode of expression in 52 normal mouse tissues. We show a definite correlation between the number of domains and the degree of tissue specificity. This trend is further supported by a novel analysis involving the time of origin of each domain. Genes containing metazoan-specific domains are more prevalent in signal transduction and cell-communication pathways, and are depleted in primary metabolism. Our analyses suggest that highly modular gene products have been recruited for tissue-specific functions that are required in complex organisms.

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Year:  2005        PMID: 15797615     DOI: 10.1016/j.tig.2005.02.008

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  11 in total

1.  Domain mobility in proteins: functional and evolutionary implications.

Authors:  Malay Kumar Basu; Eugenia Poliakov; Igor B Rogozin
Journal:  Brief Bioinform       Date:  2009-01-16       Impact factor: 11.622

2.  Evolution of domain promiscuity in eukaryotic genomes--a perspective from the inferred ancestral domain architectures.

Authors:  Inbar Cohen-Gihon; Jessica H Fong; Roded Sharan; Ruth Nussinov; Teresa M Przytycka; Anna R Panchenko
Journal:  Mol Biosyst       Date:  2010-12-03

Review 3.  The emergence of modularity in biological systems.

Authors:  Dirk M Lorenz; Alice Jeng; Michael W Deem
Journal:  Phys Life Rev       Date:  2011-02-25       Impact factor: 11.025

4.  The nature of protein domain evolution: shaping the interaction network.

Authors:  Christoph P Bagowski; Wouter Bruins; Aartjan J W Te Velthuis
Journal:  Curr Genomics       Date:  2010-08       Impact factor: 2.236

Review 5.  Transcriptional regulation by coactivators in embryonic stem cells.

Authors:  Yick W Fong; Claudia Cattoglio; Teppei Yamaguchi; Robert Tjian
Journal:  Trends Cell Biol       Date:  2012-05-07       Impact factor: 20.808

6.  'Genome design' model and multicellular complexity: golden middle.

Authors:  Alexander E Vinogradov
Journal:  Nucleic Acids Res       Date:  2006-10-24       Impact factor: 16.971

7.  An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data.

Authors:  Daniel Ramsköld; Eric T Wang; Christopher B Burge; Rickard Sandberg
Journal:  PLoS Comput Biol       Date:  2009-12-11       Impact factor: 4.475

8.  An analytically solvable model for rapid evolution of modular structure.

Authors:  Nadav Kashtan; Avi E Mayo; Tomer Kalisky; Uri Alon
Journal:  PLoS Comput Biol       Date:  2009-04-10       Impact factor: 4.475

9.  Multiple lineage specific expansions within the guanylyl cyclase gene family.

Authors:  David A Fitzpatrick; Damien M O'Halloran; Ann M Burnell
Journal:  BMC Evol Biol       Date:  2006-03-20       Impact factor: 3.260

10.  Comprehensive analysis of co-occurring domain sets in yeast proteins.

Authors:  Inbar Cohen-Gihon; Ruth Nussinov; Roded Sharan
Journal:  BMC Genomics       Date:  2007-06-11       Impact factor: 3.969

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