Literature DB >> 15792804

Structural basis of gating of CNG channels.

Alejandro Giorgetti1, Anil V Nair, Paolo Codega, Vincent Torre, Paolo Carloni.   

Abstract

Cyclic nucleotide-gated (CNG) ion channels, underlying sensory transduction in vertebrate photoreceptors and olfactory sensory neurons, require cyclic nucleotides to open. Here, we present structural models of the tetrameric CNG channel pore from bovine rod in both open and closed states, as obtained by combining homology modeling-based techniques, experimentally derived spatial constraints and structural patterns present in the PDB database. Gating is initiated by an anticlockwise rotation of the N-terminal region of the C-linker, which is then, transmitted through the S6 transmembrane helices to the P-helix, and in turn from this to the pore lumen, which opens up from 2 to 5A thus allowing for ion permeation. The approach, here presented, is expected to provide a general methodology for model ion channels and their gating when structural templates are available and an extensive electrophysiological analysis has been performed.

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Year:  2005        PMID: 15792804     DOI: 10.1016/j.febslet.2005.01.086

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  12 in total

1.  Computational molecular biology approaches to ligand-target interactions.

Authors:  Paola Lupieri; Chuong Ha Hung Nguyen; Zhaleh Ghaemi Bafghi; Alejandro Giorgetti; Paolo Carloni
Journal:  HFSP J       Date:  2009-03-10

Review 2.  Gating in CNGA1 channels.

Authors:  Monica Mazzolini; Arin Marchesi; Alejandro Giorgetti; Vincent Torre
Journal:  Pflugers Arch       Date:  2009-11-07       Impact factor: 3.657

3.  A homology model of the pore region of HCN channels.

Authors:  A Giorgetti; P Carloni; P Mistrik; V Torre
Journal:  Biophys J       Date:  2005-06-10       Impact factor: 4.033

4.  Access of quaternary ammonium blockers to the internal pore of cyclic nucleotide-gated channels: implications for the location of the gate.

Authors:  Jorge E Contreras; Miguel Holmgren
Journal:  J Gen Physiol       Date:  2006-04-10       Impact factor: 4.086

Review 5.  Function and dysfunction of CNG channels: insights from channelopathies and mouse models.

Authors:  Martin Biel; Stylianos Michalakis
Journal:  Mol Neurobiol       Date:  2007-06       Impact factor: 5.590

6.  Locking CNGA1 channels in the open and closed state.

Authors:  Anil V Nair; Monica Mazzolini; Paolo Codega; Alejandro Giorgetti; Vincent Torre
Journal:  Biophys J       Date:  2006-03-02       Impact factor: 4.033

7.  Conformational rearrangements in the S6 domain and C-linker during gating in CNGA1 channels.

Authors:  Anil V Nair; Chuong H H Nguyen; Monica Mazzolini
Journal:  Eur Biophys J       Date:  2009-06-02       Impact factor: 1.733

8.  A ring of threonines in the inner vestibule of the pore of CNGA1 channels constitutes a binding site for permeating ions.

Authors:  Arin Marchesi; Monica Mazzolini; Vincent Torre
Journal:  J Physiol       Date:  2012-08-06       Impact factor: 5.182

9.  Genome-wide Membrane Protein Structure Prediction.

Authors:  Stefano Piccoli; Eda Suku; Marianna Garonzi; Alejandro Giorgetti
Journal:  Curr Genomics       Date:  2013-08       Impact factor: 2.236

10.  Structure, dynamics and implied gating mechanism of a human cyclic nucleotide-gated channel.

Authors:  Yana Gofman; Charlotta Schärfe; Debora S Marks; Turkan Haliloglu; Nir Ben-Tal
Journal:  PLoS Comput Biol       Date:  2014-12-04       Impact factor: 4.475

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