Literature DB >> 15791936

From stationary to instationary metabolic flux analysis.

Wolfgang Wiechert1, Katharina Nöh.   

Abstract

Metabolic flux analysis using 13C labeled substrates is an important tool for metabolic engineering. Although it has now been evolving for more than ten years, metabolic flux analysis has still not reached the limits of its application. Current developments aim at extending to instationary industrial production conditions like batch and fed-batch fermentations on the one hand, and at miniaturization and high throughput flux analysis on the other. In both cases, reducing the duration of the labeling experiment is of major interest. For that reason, there is now interest in the instationary transient of the 13C enrichment during a labeling experiment. This paper presents some recent developments in the field of instationary metabolic flux analysis and discusses some critical aspects and limitations using some simulation examples.

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Year:  2005        PMID: 15791936     DOI: 10.1007/b98921

Source DB:  PubMed          Journal:  Adv Biochem Eng Biotechnol        ISSN: 0724-6145            Impact factor:   2.635


  31 in total

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Review 2.  Methods and advances in metabolic flux analysis: a mini-review.

Authors:  Maciek R Antoniewicz
Journal:  J Ind Microbiol Biotechnol       Date:  2015-01-23       Impact factor: 3.346

3.  INCA: a computational platform for isotopically non-stationary metabolic flux analysis.

Authors:  Jamey D Young
Journal:  Bioinformatics       Date:  2014-01-11       Impact factor: 6.937

4.  Isotopically nonstationary 13C flux analysis of Myc-induced metabolic reprogramming in B-cells.

Authors:  Taylor A Murphy; Chi V Dang; Jamey D Young
Journal:  Metab Eng       Date:  2012-08-08       Impact factor: 9.783

Review 5.  Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints.

Authors:  Joseph Kuo-Hsiang Tang; Le You; Robert E Blankenship; Yinjie J Tang
Journal:  J R Soc Interface       Date:  2012-08-15       Impact factor: 4.118

6.  Mapping photoautotrophic metabolism with isotopically nonstationary (13)C flux analysis.

Authors:  Jamey D Young; Avantika A Shastri; Gregory Stephanopoulos; John A Morgan
Journal:  Metab Eng       Date:  2011-09-01       Impact factor: 9.783

7.  Yeast dynamic metabolic flux measurement in nutrient-rich media by HPLC and accelerator mass spectrometry.

Authors:  Benjamin J Stewart; Ali Navid; Kenneth W Turteltaub; Graham Bench
Journal:  Anal Chem       Date:  2010-11-09       Impact factor: 6.986

8.  Dynamics of Positional Enrichment: Theoretical Development and Application to Carbon Labeling in Zymomonas mobilis.

Authors:  Fernando Alvarez-Vasquez; Yusuf A Hannun; Eberhard O Voit
Journal:  Biochem Eng J       Date:  2008-05       Impact factor: 3.978

9.  The metabolic origins of non-photorespiratory CO2 release during photosynthesis: a metabolic flux analysis.

Authors:  Yuan Xu; Xinyu Fu; Thomas D Sharkey; Yair Shachar-Hill; And Berkley J Walker
Journal:  Plant Physiol       Date:  2021-05-27       Impact factor: 8.340

Review 10.  Bidirectionality and compartmentation of metabolic fluxes are revealed in the dynamics of isotopomer networks.

Authors:  David W Schryer; Pearu Peterson; Toomas Paalme; Marko Vendelin
Journal:  Int J Mol Sci       Date:  2009-04-17       Impact factor: 6.208

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