Literature DB >> 15782172

Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.

Hajime Matsuzaki1, Shoulian Dong, Halina Loi, Xiaojun Di, Guoying Liu, Earl Hubbell, Jane Law, Tam Berntsen, Monica Chadha, Henry Hui, Geoffrey Yang, Giulia C Kennedy, Teresa A Webster, Simon Cawley, P Sean Walsh, Keith W Jones, Stephen P A Fodor, Rui Mei.   

Abstract

We present a genotyping method for simultaneously scoring 116,204 SNPs using oligonucleotide arrays. At call rates >99%, reproducibility is >99.97% and accuracy, as measured by inheritance in trios and concordance with the HapMap Project, is >99.7%. Average intermarker distance is 23.6 kb, and 92% of the genome is within 100 kb of a SNP marker. Average heterozygosity is 0.30, with 105,511 SNPs having minor allele frequencies >5%.

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Year:  2004        PMID: 15782172     DOI: 10.1038/nmeth718

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  141 in total

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Authors:  Duncan C Thomas; Robert W Haile; David Duggan
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10.  Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers.

Authors:  Michael R Miller; Joseph P Dunham; Angel Amores; William A Cresko; Eric A Johnson
Journal:  Genome Res       Date:  2006-12-22       Impact factor: 9.043

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