Literature DB >> 15781859

Catching RNA polymerase in the act of binding: intermediates in transcription illuminated by synchrotron footprinting.

Michael Brenowitz1, Dorothy A Erie, Mark R Chance.   

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Year:  2005        PMID: 15781859      PMCID: PMC555728          DOI: 10.1073/pnas.0501152102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  22 in total

Review 1.  DNA wrapping in transcription initiation by RNA polymerase II.

Authors:  B Coulombe
Journal:  Biochem Cell Biol       Date:  1999       Impact factor: 3.626

Review 2.  Single-molecule study reveals a complex E. coli RNA polymerase.

Authors:  M Guthold; D A Erie
Journal:  Chembiochem       Date:  2001-03-02       Impact factor: 3.164

3.  Sequence-independent upstream DNA-alphaCTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association.

Authors:  Wilma Ross; Richard L Gourse
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-30       Impact factor: 11.205

4.  The effects of upstream DNA on open complex formation by Escherichia coli RNA polymerase.

Authors:  Caroline A Davis; Michael W Capp; M Thomas Record; Ruth M Saecker
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-30       Impact factor: 11.205

5.  Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter.

Authors:  Bianca Sclavi; Evgeny Zaychikov; Anastasia Rogozina; Ferdinand Walther; Malcolm Buckle; Hermann Heumann
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

6.  Following the folding of RNA with time-resolved synchrotron X-ray footprinting.

Authors:  B Sclavi; S Woodson; M Sullivan; M Chance; M Brenowitz
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

7.  Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

Authors:  B Sclavi; S Woodson; M Sullivan; M R Chance; M Brenowitz
Journal:  J Mol Biol       Date:  1997-02-14       Impact factor: 5.469

Review 8.  Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches.

Authors:  V Petri; M Brenowitz
Journal:  Curr Opin Biotechnol       Date:  1997-02       Impact factor: 9.740

9.  Time-resolved hydroxyl-radical footprinting of RNA using Fe(II)-EDTA.

Authors:  K J Hampel; J M Burke
Journal:  Methods       Date:  2001-03       Impact factor: 3.608

10.  RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting.

Authors:  B Sclavi; M Sullivan; M R Chance; M Brenowitz; S A Woodson
Journal:  Science       Date:  1998-03-20       Impact factor: 47.728

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  4 in total

Review 1.  DNA wrapping in transcription initiation by RNA polymerase II.

Authors:  B Coulombe
Journal:  Biochem Cell Biol       Date:  1999       Impact factor: 3.626

2.  Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase.

Authors:  Caroline A Davis; Craig A Bingman; Robert Landick; M Thomas Record; Ruth M Saecker
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

3.  Synchrotron X-ray footprinting on tour.

Authors:  Jen Bohon; Rhijuta D'Mello; Corie Ralston; Sayan Gupta; Mark R Chance
Journal:  J Synchrotron Radiat       Date:  2013-11-02       Impact factor: 2.616

4.  Laser-free Hydroxyl Radical Protein Footprinting to Perform Higher Order Structural Analysis of Proteins.

Authors:  Scot R Weinberger; Emily E Chea; Joshua S Sharp; Sandeep K Misra
Journal:  J Vis Exp       Date:  2021-06-04       Impact factor: 1.424

  4 in total

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