Literature DB >> 15781382

Altering protein specificity: techniques and applications.

Nina M Antikainen1, Stephen F Martin.   

Abstract

Protein engineering constitutes a powerful tool for generating novel proteins that serve as catalysts to induce selective chemical and biological transformations that would not otherwise be possible. Protocols that are commonly employed for altering the substrate specificity and selectivity profiles by mutating known enzymes include rational and random methods as well as techniques that entail evolution, selection and screening. Proteins identified by these techniques play important roles in a variety of industrial and medicinal applications and in the study of protein structure-function relationships. Herein we present a critical overview of methods for creating new functional proteins having altered specificity profiles and some practical case studies in which these techniques have been applied to solving problems in synthetic and medicinal chemistry and to elucidating enzyme function and biological pathways.

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Year:  2005        PMID: 15781382     DOI: 10.1016/j.bmc.2005.01.059

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  19 in total

1.  Cysteine metabolism in Legionella pneumophila: characterization of an L-cystine-utilizing mutant.

Authors:  Fanny Ewann; Paul S Hoffman
Journal:  Appl Environ Microbiol       Date:  2006-06       Impact factor: 4.792

2.  Saturation mutagenesis of Asn152 reveals a substrate selectivity switch in P99 cephalosporinase.

Authors:  Scott T Lefurgy; René M de Jong; Virginia W Cornish
Journal:  Protein Sci       Date:  2007-12       Impact factor: 6.725

3.  "Fuzzy oil drop" model applied to individual small proteins built of 70 amino acids.

Authors:  Katarzyna Prymula; Kinga Sałapa; Irena Roterman
Journal:  J Mol Model       Date:  2010-01-19       Impact factor: 1.810

4.  Novel fluorescence-assisted whole-cell assay for engineering and characterization of proteases and their substrates.

Authors:  George Kostallas; Patrik Samuelson
Journal:  Appl Environ Microbiol       Date:  2010-09-17       Impact factor: 4.792

5.  Simple and efficient site-directed mutagenesis using two single-primer reactions in parallel to generate mutants for protein structure-function studies.

Authors:  Oded Edelheit; Aaron Hanukoglu; Israel Hanukoglu
Journal:  BMC Biotechnol       Date:  2009-06-30       Impact factor: 2.563

6.  Dissection of structure and function of the N-terminal domain of mouse DNMT1 using regional frame-shift mutagenesis.

Authors:  Leonardo D'Aiuto; Marco Marzulli; K Naga Mohan; Ewa Borowczyk; Federica Saporiti; Andrew Vandemark; J Richard Chaillet
Journal:  PLoS One       Date:  2010-03-23       Impact factor: 3.240

Review 7.  Directed evolution and rational approaches to improving Streptomyces clavuligerus deacetoxycephalosporin C synthase for cephalosporin production.

Authors:  Kian-Sim Goo; Chun-Song Chua; Tiow-Suan Sim
Journal:  J Ind Microbiol Biotechnol       Date:  2009-03-07       Impact factor: 3.346

8.  Rational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range.

Authors:  Rui Wu; Albert S Reger; Jian Cao; Andrew M Gulick; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2007-11-21       Impact factor: 3.162

Review 9.  Covalent Modification of Proteins by Plant-Derived Natural Products: Proteomic Approaches and Biological Impacts.

Authors:  Restituto Tocmo; Jacob P Veenstra; Yunying Huang; Jeremy James Johnson
Journal:  Proteomics       Date:  2020-12-31       Impact factor: 3.984

10.  SOMA: a single oligonucleotide mutagenesis and cloning approach.

Authors:  Thorsten Pfirrmann; Ashwin Lokapally; Claes Andréasson; Per Ljungdahl; Thomas Hollemann
Journal:  PLoS One       Date:  2013-06-04       Impact factor: 3.240

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