Literature DB >> 15780660

Hierarchical and metabolic regulation of glucose influx in starved Saccharomyces cerevisiae.

Sergio Rossell1, Coen C van der Weijden, Arthur L Kruckeberg, Barbara M Bakker, Hans V Westerhoff.   

Abstract

A novel method dissecting the regulation of a cellular function into direct metabolic regulation and hierarchical (e.g., gene-expression) regulation is applied to yeast starved for nitrogen or carbon. Upon nitrogen starvation glucose influx is down-regulated hierarchically. Upon carbon starvation it is down-regulated both metabolically and hierarchically. The method is expounded in terms of its implications for diverse types of regulation. It is also fine-tuned for cases where isoenzymes catalyze the flux through a single metabolic step.

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Year:  2005        PMID: 15780660     DOI: 10.1016/j.femsyr.2004.11.003

Source DB:  PubMed          Journal:  FEMS Yeast Res        ISSN: 1567-1356            Impact factor:   2.796


  23 in total

1.  Effect of nutrient starvation on the cellular composition and metabolic capacity of Saccharomyces cerevisiae.

Authors:  Eva Albers; Christer Larsson; Thomas Andlid; Michael C Walsh; Lena Gustafsson
Journal:  Appl Environ Microbiol       Date:  2007-06-01       Impact factor: 4.792

2.  Unraveling the complexity of flux regulation: a new method demonstrated for nutrient starvation in Saccharomyces cerevisiae.

Authors:  Sergio Rossell; Coen C van der Weijden; Alexander Lindenbergh; Arjen van Tuijl; Christof Francke; Barbara M Bakker; Hans V Westerhoff
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-07       Impact factor: 11.205

3.  Compartmentation prevents a lethal turbo-explosion of glycolysis in trypanosomes.

Authors:  Jurgen R Haanstra; Arjen van Tuijl; Peter Kessler; Willem Reijnders; Paul A M Michels; Hans V Westerhoff; Marilyn Parsons; Barbara M Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-13       Impact factor: 11.205

4.  Quantitative analysis of the high temperature-induced glycolytic flux increase in Saccharomyces cerevisiae reveals dominant metabolic regulation.

Authors:  Jarne Postmus; André B Canelas; Jildau Bouwman; Barbara M Bakker; Walter van Gulik; M Joost Teixeira de Mattos; Stanley Brul; Gertien J Smits
Journal:  J Biol Chem       Date:  2008-06-18       Impact factor: 5.157

5.  Approaches to biosimulation of cellular processes.

Authors:  F J Bruggeman; H V Westerhoff
Journal:  J Biol Phys       Date:  2006-11-11       Impact factor: 1.365

6.  Quantifying Dynamic Regulation in Metabolic Pathways with Nonparametric Flux Inference.

Authors:  Fei He; Michael P H Stumpf
Journal:  Biophys J       Date:  2019-04-19       Impact factor: 4.033

7.  Tissue-level modeling of xenobiotic metabolism in liver: An emerging tool for enabling clinical translational research.

Authors:  Marianthi G Lerapetritou; Panos G Georgopoulos; Charles M Roth; Loannis P Androulakis
Journal:  Clin Transl Sci       Date:  2009-06       Impact factor: 4.689

8.  The trehalose pathway regulates mitochondrial respiratory chain content through hexokinase 2 and cAMP in Saccharomyces cerevisiae.

Authors:  Abdelmajid Noubhani; Odile Bunoust; Beatriz Monge Bonini; Johan M Thevelein; Anne Devin; Michel Rigoulet
Journal:  J Biol Chem       Date:  2009-07-20       Impact factor: 5.157

Review 9.  Synthetic biology and regulatory networks: where metabolic systems biology meets control engineering.

Authors:  Fei He; Ettore Murabito; Hans V Westerhoff
Journal:  J R Soc Interface       Date:  2016-04-13       Impact factor: 4.118

10.  The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels.

Authors:  Pascale Daran-Lapujade; Sergio Rossell; Walter M van Gulik; Marijke A H Luttik; Marco J L de Groot; Monique Slijper; Albert J R Heck; Jean-Marc Daran; Johannes H de Winde; Hans V Westerhoff; Jack T Pronk; Barbara M Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-26       Impact factor: 11.205

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