Literature DB >> 15777160

Mechanisms of transcriptional regulation of the human IL-3/GM-CSF locus by inducible tissue-specific promoters and enhancers.

Peter N Cockerill1.   

Abstract

The IL-3 and GM-CSF genes are closely linked in the genome and reside within a cluster of cytokine genes. IL-3 and GM-CSF are expressed in a highly inducible and tissue-specific pattern, and this review attempts to provide a comprehensive description of the key regulatory elements in this locus that control their expression. Although these genes are typically coexpressed in T cells, they are differentially regulated in many other cell types, whereby cells such as monocytes and endothelial cells express GM-CSF, but not IL-3. This suggests that they are likely to be regulated by distinct mechanisms. This view is reinforced by the identification of three inducible enhancers in the locus that have different specificities. These enhancers are embedded within arrays of tissue-specific DNaseI hypersensitive sites that most likely play additional roles in establishing distinct patterns of gene expression. This locus also represents a valuable model system for studying the role of chromatin remodeling in cytokine gene activation. NFAT is one inducible factor that appears to play a major role in the formation of DNaseI hypersensitive sites within enhancers, and which functions in a highly cooperative manner with other classes of transcription factors to direct specific patterns of cytokine gene expression.

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Year:  2004        PMID: 15777160     DOI: 10.1615/critrevimmunol.v24.i6.10

Source DB:  PubMed          Journal:  Crit Rev Immunol        ISSN: 1040-8401            Impact factor:   2.214


  14 in total

1.  NF-κB and BRG1 bind a distal regulatory element in the IL-3/GM-CSF locus.

Authors:  Andrea L Wurster; Patricia Precht; Michael J Pazin
Journal:  Mol Immunol       Date:  2011-08-09       Impact factor: 4.407

2.  The SNF2H chromatin remodeling enzyme has opposing effects on cytokine gene expression.

Authors:  Patricia Precht; Andrea L Wurster; Michael J Pazin
Journal:  Mol Immunol       Date:  2010-05-15       Impact factor: 4.407

3.  An epigenetic chromatin remodeling role for NFATc1 in transcriptional regulation of growth and survival genes in diffuse large B-cell lymphomas.

Authors:  Lan V Pham; Archito T Tamayo; Changping Li; Carlos Bueso-Ramos; Richard J Ford
Journal:  Blood       Date:  2010-07-27       Impact factor: 22.113

4.  Transcription-dependent silencing of inducible convergent transgenes in transgenic mice.

Authors:  Fernando J Calero-Nieto; Andrew G Bert; Peter N Cockerill
Journal:  Epigenetics Chromatin       Date:  2010-01-19       Impact factor: 4.954

5.  Runx1 binds as a dimeric complex to overlapping Runx1 sites within a palindromic element in the human GM-CSF enhancer.

Authors:  Sarion R Bowers; Fernando J Calero-Nieto; Stephanie Valeaux; Narcis Fernandez-Fuentes; Peter N Cockerill
Journal:  Nucleic Acids Res       Date:  2010-05-18       Impact factor: 16.971

6.  A modular enhancer is differentially regulated by GATA and NFAT elements that direct different tissue-specific patterns of nucleosome positioning and inducible chromatin remodeling.

Authors:  Andrew G Bert; Brett V Johnson; Euan W Baxter; Peter N Cockerill
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

Review 7.  Basophils and skin disorders.

Authors:  Francesco Borriello; Francescopaolo Granata; Gianni Marone
Journal:  J Invest Dermatol       Date:  2014-02-06       Impact factor: 8.551

8.  Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data.

Authors:  Alexandra Livernois; Kristine Hardy; Renae Domaschenz; Alexie Papanicolaou; Arthur Georges; Stephen D Sarre; Sudha Rao; Tariq Ezaz; Janine E Deakin
Journal:  Immunogenetics       Date:  2016-06-02       Impact factor: 2.846

9.  A conserved insulator that recruits CTCF and cohesin exists between the closely related but divergently regulated interleukin-3 and granulocyte-macrophage colony-stimulating factor genes.

Authors:  Sarion R Bowers; Fabio Mirabella; Fernando J Calero-Nieto; Stephanie Valeaux; Suzana Hadjur; Euan W Baxter; Matthias Merkenschlager; Peter N Cockerill
Journal:  Mol Cell Biol       Date:  2009-01-21       Impact factor: 4.272

10.  The inducible tissue-specific expression of the human IL-3/GM-CSF locus is controlled by a complex array of developmentally regulated enhancers.

Authors:  Euan W Baxter; Fabio Mirabella; Sarion R Bowers; Sally R James; Aude-Marine Bonavita; Elisabeth Bertrand; Ruslan Strogantsev; Abbas Hawwari; Andrew G Bert; Andrea Gonzalez de Arce; Adam G West; Constanze Bonifer; Peter N Cockerill
Journal:  J Immunol       Date:  2012-09-28       Impact factor: 5.422

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