Literature DB >> 15776310

Development of molecular probes for dinophysis (dinophyceae) plastid: a tool to predict blooming and explore plastid origin.

Yoshiaki Takahashi1, Kiyotaka Takishita, Kazuhiko Koike, Tadashi Maruyama, Takeshi Nakayama, Atsushi Kobiyama, Takehiko Ogata.   

Abstract

Dinophysis are species of dinoflagellates that cause diarrhetic shellfish poisoning. We have previously reported that they probably acquire plastids from cryptophytes in the environment, after which they bloom. Thus monitoring the intracellular plastid density in Dinophysis and the source cryptophytes occurring in the field should allow prediction of Dinophysis blooming. In this study the nucleotide sequences of the plastid-encoded small subunit ribosomal RNA gene and rbcL (encoding the large subunit of RuBisCO) from Dinophysis spp. were compared with those of cryptophytes, and genetic probes specific for the Dinophysis plastid were designed. Fluorescent in situ hybridization (FISH) showed that the probes bound specifically to Dinophysis plastids. Also, FISH on collected nanoplankton showed the presence of probe-hybridized eukaryotes, possibly cryptophytes with plastids identical to those of Dinophysis. These probes are useful not only as markers for plastid density and activity of Dinophysis, but also as tools for monitoring cryptophytes that may be sources of Dinophysis plastids.

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Year:  2005        PMID: 15776310     DOI: 10.1007/s10126-004-0482-5

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  12 in total

1.  Single gene circles in dinoflagellate chloroplast genomes.

Authors:  Z Zhang; B R Green; T Cavalier-Smith
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  Molecular evidence for plastid robbery (Kleptoplastidy) in Dinophysis, a dinoflagellate causing diarrhetic shellfish poisoning.

Authors:  Kiyotaka Takishita; Kazuhiko Koike; Tadashi Maruyama; Takehiko Ogata
Journal:  Protist       Date:  2002-09

3.  Nuclear and nucleomorph SSU rDNA phylogeny in the Cryptophyta and the evolution of cryptophyte diversity.

Authors:  Kerstin Hoef-Emden; Birger Marin; Michael Melkonian
Journal:  J Mol Evol       Date:  2002-08       Impact factor: 2.395

4.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

5.  Phylogenetic diversity of ultraplankton plastid small-subunit rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States.

Authors:  M S Rappé; M T Suzuki; K L Vergin; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  1998-01       Impact factor: 4.792

6.  Nutritional strategies in dinoflagellates: A review with emphasis on cell biological aspects.

Authors:  E Schnepf; M Elbrächter
Journal:  Eur J Protistol       Date:  2011-11-02       Impact factor: 3.020

7.  Minicircular plastid DNA in the dinoflagellate Amphidinium operculatum.

Authors:  A C Barbrook; C J Howe
Journal:  Mol Gen Genet       Date:  2000-02

8.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

9.  Phylogeny of ultra-rapidly evolving dinoflagellate chloroplast genes: a possible common origin for sporozoan and dinoflagellate plastids.

Authors:  Z Zhang; B R Green; T Cavalier-Smith
Journal:  J Mol Evol       Date:  2000-07       Impact factor: 2.395

10.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

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  9 in total

1.  Multiple plastids collected by the dinoflagellate Dinophysis mitra through kleptoplastidy.

Authors:  Goh Nishitani; Satoshi Nagai; Shiho Hayakawa; Yuki Kosaka; Kiyonari Sakurada; Takashi Kamiyama; Takashi Gojobori
Journal:  Appl Environ Microbiol       Date:  2011-11-18       Impact factor: 4.792

2.  High-level congruence of Myrionecta rubra prey and Dinophysis species plastid identities as revealed by genetic analyses of isolates from Japanese coastal waters.

Authors:  Goh Nishitani; Satoshi Nagai; Katsuhisa Baba; Susumu Kiyokawa; Yuki Kosaka; Kazuyoshi Miyamura; Tetsuya Nishikawa; Kiyonari Sakurada; Akiyoshi Shinada; Takashi Kamiyama
Journal:  Appl Environ Microbiol       Date:  2010-03-19       Impact factor: 4.792

3.  Multiple simultaneous detection of Harmful Algal Blooms (HABs) through a high throughput bead array technology, with potential use in phytoplankton community analysis.

Authors:  G Scorzetti; L E Brand; G L Hitchcock; K S Rein; C D Sinigalliano; J W Fell
Journal:  Harmful Algae       Date:  2009       Impact factor: 4.273

4.  Transcriptome analysis reveals nuclear-encoded proteins for the maintenance of temporary plastids in the dinoflagellate Dinophysis acuminata.

Authors:  Jennifer H Wisecaver; Jeremiah D Hackett
Journal:  BMC Genomics       Date:  2010-06-10       Impact factor: 3.969

5.  Nuclear, mitochondrial and plastid gene phylogenies of Dinophysis miles (Dinophyceae): evidence of variable types of chloroplasts.

Authors:  Dajun Qiu; Liangmin Huang; Sheng Liu; Senjie Lin
Journal:  PLoS One       Date:  2011-12-29       Impact factor: 3.240

6.  A comprehensive framework for functional diversity patterns of marine chromophytic phytoplankton using rbcL phylogeny.

Authors:  Brajogopal Samanta; Punyasloke Bhadury
Journal:  Sci Rep       Date:  2016-02-10       Impact factor: 4.379

7.  Metabolomic Profiles of Dinophysis acuminata and Dinophysis acuta Using Non-Targeted High-Resolution Mass Spectrometry: Effect of Nutritional Status and Prey.

Authors:  María García-Portela; Beatriz Reguera; Manoella Sibat; Andreas Altenburger; Francisco Rodríguez; Philipp Hess
Journal:  Mar Drugs       Date:  2018-04-26       Impact factor: 5.118

8.  Notes on the Cultivation of Two Mixotrophic Dinophysis Species and Their Ciliate Prey Mesodinium rubrum.

Authors:  Jorge Hernández-Urcera; Pilar Rial; María García-Portela; Patricia Lourés; Jane Kilcoyne; Francisco Rodríguez; Amelia Fernández-Villamarín; Beatriz Reguera
Journal:  Toxins (Basel)       Date:  2018-12-01       Impact factor: 4.546

9.  Molecular probes and microarrays for the detection of toxic algae in the genera Dinophysis and Phalacroma (Dinophyta).

Authors:  Bente Edvardsen; Simon M Dittami; René Groben; Sissel Brubak; Laura Escalera; Francisco Rodríguez; Beatriz Reguera; Jixin Chen; Linda K Medlin
Journal:  Environ Sci Pollut Res Int       Date:  2012-12-21       Impact factor: 4.223

  9 in total

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