Literature DB >> 15769838

Using the biological taxonomy to access biological literature with PathBinderH.

J Ding1, K Viswanathan, D Berleant, L Hughes, E S Wurtele, D Ashlock, J A Dickerson, A Fulmer, P S Schnable.   

Abstract

UNLABELLED: PathBinderH allows users to make queries that retrieve sentences and the abstracts containing them from PubMed. Another aspect of PathBinderH is that users can specify biological taxa in order to limit searches by mentioning either the specified taxa, or their subordinate taxa, in the biological taxonomy. Although the current project requires this function only for plant taxa, the principle is extensible to the entire taxonomy. AVAILABILITY: www.plantgenomics.iastate.edu/PathBinderH. Source code and databases on request.

Mesh:

Year:  2005        PMID: 15769838     DOI: 10.1093/bioinformatics/bti381

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  5 in total

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2.  ISDB: Interaction Sentence Database.

Authors:  Michael A Bauer; Robert E Belford; Jing Ding; Daniel Berleant
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4.  Corpus refactoring: a feasibility study.

Authors:  Helen L Johnson; William A Baumgartner; Martin Krallinger; K Bretonnel Cohen; Lawrence Hunter
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5.  Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.

Authors:  Irena Spasić; Daniel Schober; Susanna-Assunta Sansone; Dietrich Rebholz-Schuhmann; Douglas B Kell; Norman W Paton
Journal:  BMC Bioinformatics       Date:  2008-04-29       Impact factor: 3.169

  5 in total

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