Literature DB >> 15765226

Estimating rate constants from single ion channel currents when the initial distribution is known.

Yu-Kai The1, Jacqueline Fernandez, M Oana Popa, Holger Lerche, Jens Timmer.   

Abstract

Single ion channel currents can be analysed by hidden or aggregated Markov models. A classical result from Fredkin et al. (Proceedings of the Berkeley conference in honor of Jerzy Neyman and Jack Kiefer, vol I, pp 269-289, 1985) states that the maximum number of identifiable parameters is bounded by 2n(o)n(c), where n(o) and n(c) denote the number of open and closed states, respectively. We show that this bound can be overcome when the probabilities of the initial distribution are known and the data consist of several sweeps.

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Year:  2005        PMID: 15765226     DOI: 10.1007/s00249-004-0451-y

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  16 in total

1.  On identification of Na(+) channel gating schemes using moving-average filtered hidden Markov models.

Authors:  S Michalek; H Lerche; M Wagner; N Mitrović; M Schiebe; F Lehmann-Horn; J Timmer
Journal:  Eur Biophys J       Date:  1999       Impact factor: 1.733

2.  Hidden Markov modeling for single channel kinetics with filtering and correlated noise.

Authors:  F Qin; A Auerbach; F Sachs
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

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Authors:  D R Fredkin; J A Rice
Journal:  Proc Biol Sci       Date:  1992-08-22       Impact factor: 5.349

4.  A cluster of hydrophobic amino acid residues required for fast Na(+)-channel inactivation.

Authors:  J W West; D E Patton; T Scheuer; Y Wang; A L Goldin; W A Catterall
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-15       Impact factor: 11.205

5.  Characterization of single channel currents using digital signal processing techniques based on Hidden Markov Models.

Authors:  S H Chung; J B Moore; L G Xia; L S Premkumar; P W Gage
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1990-09-29       Impact factor: 6.237

6.  Estimating the number of channels in patch recordings.

Authors:  R Horn
Journal:  Biophys J       Date:  1991-08       Impact factor: 4.033

7.  Equivalence of aggregated Markov models of ion-channel gating.

Authors:  P Kienker
Journal:  Proc R Soc Lond B Biol Sci       Date:  1989-04-22

8.  On the stochastic properties of bursts of single ion channel openings and of clusters of bursts.

Authors:  D Colquhoun; A G Hawkes
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1982-12-24       Impact factor: 6.237

9.  Voltage-dependent properties of three different gating modes in single cardiac Na+ channels.

Authors:  T Böhle; K Benndorf
Journal:  Biophys J       Date:  1995-09       Impact factor: 4.033

10.  Statistical properties of single sodium channels.

Authors:  R Horn; C A Vandenberg
Journal:  J Gen Physiol       Date:  1984-10       Impact factor: 4.086

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  1 in total

1.  Modeling of single noninactivating Na+ channels: evidence for two open and several fast inactivated states.

Authors:  Yu-Kai The; Jacqueline Fernandes; M Oana Popa; Alexi K Alekov; Jens Timmer; Holger Lerche
Journal:  Biophys J       Date:  2006-03-02       Impact factor: 4.033

  1 in total

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