Literature DB >> 15763567

An integrated approach for inference and mechanistic modeling for advancing drug development.

Sergej V Aksenov1, Bruce Church, Anjali Dhiman, Anna Georgieva, Ramesh Sarangapani, Gabriel Helmlinger, Iya G Khalil.   

Abstract

An important challenge facing researchers in drug development is how to translate multi-omic measurements into biological insights that will help advance drugs through the clinic. Computational biology strategies are a promising approach for systematically capturing the effect of a given drug on complex molecular networks and on human physiology. This article discusses a two-pronged strategy for inferring biological interactions from large-scale multi-omic measurements and accounting for known biology via mechanistic dynamical simulations of pathways, cells, and organ- and tissue level models. These approaches are already playing a role in driving drug development by providing a rational and systematic computational framework.

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Year:  2005        PMID: 15763567     DOI: 10.1016/j.febslet.2005.02.012

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  6 in total

1.  Dual inhibition of akt/mammalian target of rapamycin pathway by nanoparticle albumin-bound-rapamycin and perifosine induces antitumor activity in multiple myeloma.

Authors:  Diana Cirstea; Teru Hideshima; Scott Rodig; Loredana Santo; Samantha Pozzi; Sonia Vallet; Hiroshi Ikeda; Giulia Perrone; Gullu Gorgun; Kishan Patel; Neil Desai; Peter Sportelli; Shweta Kapoor; Shireen Vali; Siddhartha Mukherjee; Nikhil C Munshi; Kenneth C Anderson; Noopur Raje
Journal:  Mol Cancer Ther       Date:  2010-04-06       Impact factor: 6.261

2.  A computational framework for the topological analysis and targeted disruption of signal transduction networks.

Authors:  Madhukar S Dasika; Anthony Burgard; Costas D Maranas
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

3.  Emerging technologies for the genomic analysis of cancer.

Authors:  John Nemunaitis; Neil N Senzer
Journal:  F1000 Biol Rep       Date:  2009-05-08

4.  Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems.

Authors:  Maria Rodriguez-Fernandez; Jose A Egea; Julio R Banga
Journal:  BMC Bioinformatics       Date:  2006-11-02       Impact factor: 3.169

5.  Computational inference of neural information flow networks.

Authors:  V Anne Smith; Jing Yu; Tom V Smulders; Alexander J Hartemink; Erich D Jarvis
Journal:  PLoS Comput Biol       Date:  2006-10-12       Impact factor: 4.475

6.  A study on multi-omic oscillations in Escherichia coli metabolic networks.

Authors:  Francesco Bardozzo; Pietro Lió; Roberto Tagliaferri
Journal:  BMC Bioinformatics       Date:  2018-07-09       Impact factor: 3.169

  6 in total

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