Literature DB >> 15763558

From protein networks to biological systems.

Peter Uetz1, Russell L Finley.   

Abstract

A system-level understanding of any biological process requires a map of the relationships among the various molecules involved. Technologies to detect and predict protein interactions have begun to produce very large maps of protein interactions, some including most of an organism's proteins. These maps can be used to study how proteins work together to form molecular machines and regulatory pathways. They also provide a framework for constructing predictive models of how information and energy flow through biological networks. In many respects, protein interaction maps are an entrée into systems biology.

Mesh:

Year:  2005        PMID: 15763558     DOI: 10.1016/j.febslet.2005.02.001

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  21 in total

1.  Gene duplication and the origin of novel proteins.

Authors:  Austin L Hughes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-13       Impact factor: 11.205

2.  Automatic parameter learning for multiple local network alignment.

Authors:  Jason Flannick; Antal Novak; Chuong B Do; Balaji S Srinivasan; Serafim Batzoglou
Journal:  J Comput Biol       Date:  2009-08       Impact factor: 1.479

3.  Ensemble non-negative matrix factorization methods for clustering protein-protein interactions.

Authors:  Derek Greene; Gerard Cagney; Nevan Krogan; Pádraig Cunningham
Journal:  Bioinformatics       Date:  2008-06-12       Impact factor: 6.937

4.  A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Authors:  Svetlana Pacifico; Guozhen Liu; Stephen Guest; Jodi R Parrish; Farshad Fotouhi; Russell L Finley
Journal:  BMC Bioinformatics       Date:  2006-04-07       Impact factor: 3.169

Review 5.  Cytomics - importance of multimodal analysis of cell function and proliferation in oncology.

Authors:  A Tárnok; J Bocsi; G Brockhoff
Journal:  Cell Prolif       Date:  2006-12       Impact factor: 6.831

6.  Estimating the size of the human interactome.

Authors:  Michael P H Stumpf; Thomas Thorne; Eric de Silva; Ronald Stewart; Hyeong Jun An; Michael Lappe; Carsten Wiuf
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-12       Impact factor: 11.205

7.  The apoptotic machinery as a biological complex system: analysis of its omics and evolution, identification of candidate genes for fourteen major types of cancer, and experimental validation in CML and neuroblastoma.

Authors:  Cinzia Di Pietro; Marco Ragusa; Davide Barbagallo; Laura R Duro; Maria R Guglielmino; Alessandra Majorana; Rosario Angelica; Marina Scalia; Luisa Statello; Loredana Salito; Luisa Tomasello; Salvo Pernagallo; Salvo Valenti; Vito D'Agostino; Patrizio Triberio; Igor Tandurella; Giuseppe A Palumbo; Piera La Cava; Viviana Cafiso; Taschia Bertuccio; Maria Santagati; Giovanni Li Destri; Salvatore Lanzafame; Francesco Di Raimondo; Stefania Stefani; Bud Mishra; Michele Purrello
Journal:  BMC Med Genomics       Date:  2009-04-30       Impact factor: 3.063

8.  POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data.

Authors:  Joana P Gonçalves; Mário Grãos; André X C N Valente
Journal:  J R Soc Interface       Date:  2008-11-28       Impact factor: 4.118

9.  Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell.

Authors:  Antonio Marco; Ignacio Marín
Journal:  BMC Syst Biol       Date:  2009-07-15

10.  NetPath: a public resource of curated signal transduction pathways.

Authors:  Kumaran Kandasamy; S Sujatha Mohan; Rajesh Raju; Shivakumar Keerthikumar; Ghantasala S Sameer Kumar; Abhilash K Venugopal; Deepthi Telikicherla; J Daniel Navarro; Suresh Mathivanan; Christian Pecquet; Sashi Kanth Gollapudi; Sudhir Gopal Tattikota; Shyam Mohan; Hariprasad Padhukasahasram; Yashwanth Subbannayya; Renu Goel; Harrys K C Jacob; Jun Zhong; Raja Sekhar; Vishalakshi Nanjappa; Lavanya Balakrishnan; Roopashree Subbaiah; Y L Ramachandra; B Abdul Rahiman; T S Keshava Prasad; Jian-Xin Lin; Jon C D Houtman; Stephen Desiderio; Jean-Christophe Renauld; Stefan N Constantinescu; Osamu Ohara; Toshio Hirano; Masato Kubo; Sujay Singh; Purvesh Khatri; Sorin Draghici; Gary D Bader; Chris Sander; Warren J Leonard; Akhilesh Pandey
Journal:  Genome Biol       Date:  2010-01-12       Impact factor: 13.583

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