Literature DB >> 15752618

Stiff polymer adsorption. Onset to pattern recognition.

Juan J Cerdà1, Tomás Sintes.   

Abstract

We present the results of extensive off-lattice Monte-Carlo simulations of a stiff polymer chain adsorbing onto a sticky periodic stripe-like pattern of variable width. We have analyzed, in terms of the chain length and rigidity, the adsorption and the pattern recognition process as a function of the stripe width. We have seen that this process is twofold: (i) the chain adsorbs rather isotropically onto the surface at a characteristic temperature T(c) and (ii) a further reduction in the temperature is needed for the chain to reorganize and adjust to the specific pattern. Such polymer reorganization has been studied through the evaluation of the chain degree of stretching and asphericity. We have found an optimal stripe width that maximizes the stretching. We have introduced a criteria to estimate the characteristic temperature at which the pattern recognition takes place T(r)<T(c) and we have studied its dependence with the chain and surface relevant parameters.

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Year:  2004        PMID: 15752618     DOI: 10.1016/j.bpc.2004.12.027

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  2 in total

1.  Label-free, atomic force microscopy-based mapping of DNA intrinsic curvature for the nanoscale comparative analysis of bent duplexes.

Authors:  Renato Buzio; Luca Repetto; Francesca Giacopelli; Roberto Ravazzolo; Ugo Valbusa
Journal:  Nucleic Acids Res       Date:  2012-03-08       Impact factor: 16.971

2.  Symmetric curvature descriptors for label-free analysis of DNA.

Authors:  Renato Buzio; Luca Repetto; Francesca Giacopelli; Roberto Ravazzolo; Ugo Valbusa
Journal:  Sci Rep       Date:  2014-09-24       Impact factor: 4.379

  2 in total

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