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Literature DB >> 15749693

PSIbase: a database of Protein Structural Interactome map (PSIMAP).

Sungsam Gong¹, Giseok Yoon, Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak.

Abstract

UNLABELLED: Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain-domain and protein-protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences. AVAILABILITY: http://psimap.org and http://psibase.kaist.ac.kr/

Mesh：

Substances：
Proteins

Year: 2005 PMID： 15749693 DOI： 10.1093/bioinformatics/bti366

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

34 in total

1. Dynamic protein domains: identification, interdependence, and stability.

Authors: Semen O Yesylevskyy; Valery N Kharkyanen; Alexander P Demchenko
Journal: Biophys J Date: 2006-04-21 Impact factor: 4.033

2. Study of intra-inter species protein-protein interactions for potential drug targets identification and subsequent drug design for Escherichia coli O104:H4 C277-11.

Authors: Shakhinur Islam Mondal; Zabed Mahmud; Montasir Elahi; Arzuba Akter; Nurnabi Azad Jewel; Md Muzahidul Islam; Sabiha Ferdous; Taisei Kikuchi
Journal: In Silico Pharmacol Date: 2017-04-11

PSIbase: a database of Protein Structural Interactome map (PSIMAP).

1. Dynamic protein domains: identification, interdependence, and stability.

2. Study of intra-inter species protein-protein interactions for potential drug targets identification and subsequent drug design for Escherichia coli O104:H4 C277-11.

3. Specificity in protein interactions and its relationship with sequence diversity and coevolution.

Review 4. Network integration and graph analysis in mammalian molecular systems biology.

5. A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.

6. Statistical analysis of interface similarity in crystals of homologous proteins.

7. MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis.

8. Struct2Net: a web service to predict protein-protein interactions using a structure-based approach.

9. PepX: a structural database of non-redundant protein-peptide complexes.

10. PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440.