Literature DB >> 15747317

Determination of absolute configurations of chiral molecules using ab initio time-dependent Density Functional Theory calculations of optical rotation: how reliable are absolute configurations obtained for molecules with small rotations?

P J Stephens1, D M McCann, J R Cheeseman, M J Frisch.   

Abstract

The absolute configuration (AC) of a chiral molecule can be determined via calculation of its specific rotation. Currently, the latter is most accurately carried out using the TDDFT/GIAO methodology. Here we examine the reliability of this methodology in determining ACs of molecules with small specific rotations. We report TDDFT/GIAO B3LYP/aug-cc-pVDZ//B3LYP/6-31G* calculations of the sodium D line specific rotations, [alpha]D, of 65 conformationally rigid chiral molecules whose experimental [alpha]D values are small (<100). The RMS deviations, sigma, of calculated and experimental [alpha]D values is 28.9. The distribution of deviations is approximately Gaussian, i.e., random. For eight molecules, more than 10% of the set, the sign of the predicted [alpha]D is incorrect. In determining an AC of a rigid molecule from [alpha]D with 95% confidence, the calculated [alpha]D value must lie within +/-2sigma of the experimental [alpha]D for one, but not both, of the possible ACs. For the 65 molecules of this study +/-2sigma is 57.8. For conformationally flexible molecules, the error bar is +/- >57.8. 2004 Wiley-Liss, Inc.

Entities:  

Year:  2005        PMID: 15747317     DOI: 10.1002/chir.20109

Source DB:  PubMed          Journal:  Chirality        ISSN: 0899-0042            Impact factor:   2.437


  7 in total

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2.  Tailoring enzymes involved in the biosynthesis of angucyclines contain latent context-dependent catalytic activities.

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Review 3.  Absolute configurations of DNA lesions determined by comparisons of experimental ECD and ORD spectra with DFT calculations.

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Journal:  Chirality       Date:  2009       Impact factor: 2.437

4.  Determination of absolute configurations of 4-hydroxyequilenin-cytosine and -adenine adducts by optical rotatory dispersion, electronic circular dichroism, density functional theory calculations, and mass spectrometry.

Authors:  Shuang Ding; Yan Wang; Alexander Kolbanovskiy; Alexander Durandin; Judy L Bolton; Richard B van Breemen; Suse Broyde; Nicholas E Geacintov
Journal:  Chem Res Toxicol       Date:  2008-08-05       Impact factor: 3.739

5.  Absolute configuration of actinophyllic acid as determined through chiroptical data.

Authors:  Tohru Taniguchi; Connor L Martin; Kenji Monde; Koji Nakanishi; Nina Berova; Larry E Overman
Journal:  J Nat Prod       Date:  2009-03-27       Impact factor: 4.050

6.  Rapid Separation of Enantiomeric Impurities in Chiral Molecules by a Self-Referential Weak Measurement System.

Authors:  Yang Xu; Lixuan Shi; Tian Guan; Suyi Zhong; Xuesi Zhou; Dongmei Li; Cuixia Guo; Yuxuan Yang; Xiangnan Wang; Zhangyan Li; Yonghong He; Luyuan Xie; Zonghan Gan
Journal:  Sensors (Basel)       Date:  2018-11-06       Impact factor: 3.576

7.  Connection of Isolated Stereoclusters by Combining 13C-RCSA, RDC, and J-Based Configurational Analyses and Structural Revision of a Tetraprenyltoluquinol Chromane Meroterpenoid from Sargassum muticum.

Authors:  Juan Carlos C Fuentes-Monteverde; Nilamoni Nath; Abel M Forero; Elena M Balboa; Armando Navarro-Vázquez; Christian Griesinger; Carlos Jiménez; Jaime Rodríguez
Journal:  Mar Drugs       Date:  2022-07-18       Impact factor: 6.085

  7 in total

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