Literature DB >> 15746287

ADAPT: a database of affymetrix probesets and transcripts.

Hui Sun Leong1, Tim Yates, Claire Wilson, Crispin J Miller.   

Abstract

UNLABELLED: ADAPT is an online database providing comprehensive mappings between Affymetrix probes and RefSeq and Ensembl transcripts. ADAPT was designed to help interpret microarray experiments by providing a means to explore the many-to-many relationships that exist between probes, probesets, transcripts and genes. AVAILABILITY: ADAPT can be queried via the web at http://bioinformatics.picr.man.ac.uk/adapt

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Year:  2005        PMID： 15746287     DOI： 10.1093/bioinformatics/bti359

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  21 in total

1.  Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain.

Authors:  Alexandre Kuhn; Doris Thu; Henry J Waldvogel; Richard L M Faull; Ruth Luthi-Carter
Journal:  Nat Methods       Date:  2011-10-09       Impact factor: 28.547

Review 2.  Gene set enrichment analysis: performance evaluation and usage guidelines.

Authors:  Jui-Hung Hung; Tun-Hsiang Yang; Zhenjun Hu; Zhiping Weng; Charles DeLisi
Journal:  Brief Bioinform       Date:  2011-09-07       Impact factor: 11.622

3.  GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Authors:  Alberto Risueño; Celia Fontanillo; Marcel E Dinger; Javier De Las Rivas
Journal:  BMC Bioinformatics       Date:  2010-04-29       Impact factor: 3.169

4.  Computational identification of transcriptionally co-regulated genes, validation with the four ANT isoform genes.

Authors:  Pierre-Yves Dupont; Audrey Guttin; Jean-Paul Issartel; Georges Stepien
Journal:  BMC Genomics       Date:  2012-09-15       Impact factor: 3.969

5.  Jetset: selecting the optimal microarray probe set to represent a gene.

Authors:  Qiyuan Li; Nicolai J Birkbak; Balazs Gyorffy; Zoltan Szallasi; Aron C Eklund
Journal:  BMC Bioinformatics       Date:  2011-12-15       Impact factor: 3.169

6.  GPX-Macrophage Expression Atlas: a database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults.

Authors:  Graeme R Grimes; Stuart Moodie; John S Beattie; Marie Craigon; Paul Dickinson; Thorsten Forster; Andrew D Livingston; Muriel Mewissen; Kevin A Robertson; Alan J Ross; Garwin Sing; Peter Ghazal
Journal:  BMC Genomics       Date:  2005-12-12       Impact factor: 3.969

7.  PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays.

Authors:  Ramil N Nurtdinov; Mikhail O Vasiliev; Anna S Ershova; Ilia S Lossev; Anna S Karyagina
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

8.  Direct integration of intensity-level data from Affymetrix and Illumina microarrays improves statistical power for robust reanalysis.

Authors:  Arran K Turnbull; Robert R Kitchen; Alexey A Larionov; Lorna Renshaw; J Michael Dixon; Andrew H Sims
Journal:  BMC Med Genomics       Date:  2012-08-21       Impact factor: 3.063

9.  Salvaging Affymetrix probes after probe-level re-annotation.

Authors:  Wim C de Leeuw; Han Rauwerda; Martijs J Jonker; Timo M Breit
Journal:  BMC Res Notes       Date:  2008-08-19

10.  Analysis of probe level patterns in Affymetrix microarray data.

Authors:  Alexander C Cambon; Abdelnaby Khalyfa; Nigel G F Cooper; Caryn M Thompson
Journal:  BMC Bioinformatics       Date:  2007-05-04       Impact factor: 3.169
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