Literature DB >> 15740738

Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions.

Olga V Moroz1, Alexey G Murzin, Kira S Makarova, Eugene V Koonin, Keith S Wilson, Michael Y Galperin.   

Abstract

Structure-guided analysis of the new dimeric dUTPase family revealed its sequence relationship to the phage T4 dCTPase, phosphoribosyl-ATP pyrophosphatase HisE, NTP pyrophosphatase MazG, and several uncharacterized protein families, including the human protein XTP3TPA (RS21-C6), which is overexpressed in embryonic and cancer cells. Comparison with the recently determined structure of a MazG-like protein from Sulfolobus solfataricus supported the unification of these enzymes in one superfamily of all-alpha NTP pyrophosphatases, suggesting that dimeric dUTPases evolved from a tetrameric MazG-like ancestor by gene duplication. Analysis of the structure of the Sulfolobus MazG points to 2-hydroxyadenosine (isoguanosine) triphosphate, a product of oxidative damage of ATP, as the most likely substrate. We predict that uncharacterized members of this superfamily perform "house-cleaning" functions by hydrolyzing abnormal NTPs and are functionally analogous to the structurally unrelated hydrolases of the Nudix superfamily. We outline probable tertiary and quaternary structures of the all-alpha NTP pyrophosphatase superfamily members.

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Year:  2005        PMID: 15740738     DOI: 10.1016/j.jmb.2005.01.030

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  36 in total

1.  Derepression of SaPIbov1 Is Independent of φNM1 Type 2 dUTPase Activity and Is Inhibited by dUTP and dUMP.

Authors:  Rosanne L L Hill; Jiri Vlach; Laura K Parker; Gail E Christie; Jamil S Saad; Terje Dokland
Journal:  J Mol Biol       Date:  2017-04-08       Impact factor: 5.469

2.  SCOOP: a simple method for identification of novel protein superfamily relationships.

Authors:  Alex Bateman; Robert D Finn
Journal:  Bioinformatics       Date:  2007-02-03       Impact factor: 6.937

3.  Triptolide directly inhibits dCTP pyrophosphatase.

Authors:  Timothy W Corson; Hüseyin Cavga; Nicholas Aberle; Craig M Crews
Journal:  Chembiochem       Date:  2011-06-10       Impact factor: 3.164

4.  Structural and functional insights into DR2231 protein, the MazG-like nucleoside triphosphate pyrophosphohydrolase from Deinococcus radiodurans.

Authors:  Ana Maria D Gonçalves; Daniele de Sanctis; Sean M McSweeney
Journal:  J Biol Chem       Date:  2011-07-06       Impact factor: 5.157

Review 5.  Metabolite damage and its repair or pre-emption.

Authors:  Carole L Linster; Emile Van Schaftingen; Andrew D Hanson
Journal:  Nat Chem Biol       Date:  2013-02       Impact factor: 15.040

6.  Mycobacterial MazG is a novel NTP pyrophosphohydrolase involved in oxidative stress response.

Authors:  Liang-dong Lu; Qing Sun; Xiao-yong Fan; Yi Zhong; Yu-feng Yao; Guo-Ping Zhao
Journal:  J Biol Chem       Date:  2010-06-07       Impact factor: 5.157

7.  A Network Biology Approach to Decipher Stress Response in Bacteria Using Escherichia coli As a Model.

Authors:  Shashwat Deepali Nagar; Bhavye Aggarwal; Shikha Joon; Rakesh Bhatnagar; Sonika Bhatnagar
Journal:  OMICS       Date:  2016-05

8.  The 1.25 A resolution structure of phosphoribosyl-ATP pyrophosphohydrolase from Mycobacterium tuberculosis.

Authors:  Farah Javid-Majd; Dong Yang; Thomas R Ioerger; James C Sacchettini
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-05-14

9.  Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.

Authors:  Gye Won Han; Marc André Elsliger; Todd O Yeates; Qingping Xu; Alexey G Murzin; S Sri Krishna; Lukasz Jaroszewski; Polat Abdubek; Tamara Astakhova; Herbert L Axelrod; Dennis Carlton; Connie Chen; Hsiu Ju Chiu; Thomas Clayton; Debanu Das; Marc C Deller; Lian Duan; Dustin Ernst; Julie Feuerhelm; Joanna C Grant; Anna Grzechnik; Kevin K Jin; Hope A Johnson; Heath E Klock; Mark W Knuth; Piotr Kozbial; Abhinav Kumar; Winnie W Lam; David Marciano; Daniel McMullan; Mitchell D Miller; Andrew T Morse; Edward Nigoghossian; Linda Okach; Ron Reyes; Christopher L Rife; Natasha Sefcovic; Henry J Tien; Christine B Trame; Henry van den Bedem; Dana Weekes; Keith O Hodgson; John Wooley; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-08-04

10.  Crystal structure of Escherichia coli MazG, the regulator of nutritional stress response.

Authors:  Sujin Lee; Myung Hee Kim; Beom Sik Kang; Jeong-Sun Kim; Ghyung-Hwa Kim; Yeon-Gil Kim; Kyung Jin Kim
Journal:  J Biol Chem       Date:  2008-03-18       Impact factor: 5.157

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