Literature DB >> 15740354

From the double-stranded helix to the chiral nematic phase of B-DNA: a molecular model.

Fabio Tombolato1, Alberta Ferrarini.   

Abstract

B-DNA solutions of suitable concentration form left-handed chiral nematic phases (cholesterics). Such phases have also been observed in solutions of other stiff or semiflexible chiral polymers; magnitude and handedness of the cholesteric pitch are uniquely related to the molecular features. In this work we present a theoretical method and a numerical procedure which, starting from the structure of polyelectrolytes, lead to the prediction of the cholesteric pitch. Molecular expressions for the free energy of the system are obtained on the basis of steric and electrostatic interactions between polymers; the former are described in terms of excluded volume, while a mean field approximation is used for the latter. Calculations have been performed for 130 base pair fragments of B-DNA. The theoretical predictions provide an explanation for the experimental behavior, by showing the counteracting role played by shape and charge chirality of the molecule.

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Year:  2005        PMID: 15740354     DOI: 10.1063/1.1839859

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Right-handed double-helix ultrashort DNA yields chiral nematic phases with both right- and left-handed director twist.

Authors:  Giuliano Zanchetta; Fabio Giavazzi; Michi Nakata; Marco Buscaglia; Roberto Cerbino; Noel A Clark; Tommaso Bellini
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

2.  Electrostatics of DNA-DNA juxtapositions: consequences for type II topoisomerase function.

Authors:  Graham L Randall; B Montgomery Pettitt; Gregory R Buck; E Lynn Zechiedrich
Journal:  J Phys Condens Matter       Date:  2006-04-12       Impact factor: 2.333

3.  Topological friction strongly affects viral DNA ejection.

Authors:  Davide Marenduzzo; Cristian Micheletti; Enzo Orlandini; De Witt Sumners
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-22       Impact factor: 11.205

4.  DNA-DNA interactions in bacteriophage capsids are responsible for the observed DNA knotting.

Authors:  Davide Marenduzzo; Enzo Orlandini; Andrzej Stasiak; De Witt Sumners; Luca Tubiana; Cristian Micheletti
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

5.  Nematic phase characterisation of the self-assembling sphere-cylinders based on the theoretically calculated RDFs.

Authors:  Elena S Pyanzina; Sofia S Kantorovich; Cristiano De Michele
Journal:  Eur Phys J E Soft Matter       Date:  2015-07-21       Impact factor: 1.890

6.  Free energy of conformational isomers: The case of gapped DNA duplexes.

Authors:  Alberto Giacomo Orellana; Cristiano De Michele
Journal:  Eur Phys J E Soft Matter       Date:  2019-06-07       Impact factor: 1.890

7.  Evidence of liquid crystal-assisted abiotic ligation of nucleic acids.

Authors:  Tommaso P Fraccia; Giuliano Zanchetta; Valeria Rimoldi; Noel A Clark; Tommaso Bellini
Journal:  Orig Life Evol Biosph       Date:  2015-05-15       Impact factor: 1.950

8.  Speeding up Monte Carlo simulation of patchy hard cylinders.

Authors:  Alberto Giacomo Orellana; Emanuele Romani; Cristiano De Michele
Journal:  Eur Phys J E Soft Matter       Date:  2018-04-16       Impact factor: 1.890

9.  Chiral shape fluctuations and the origin of chirality in cholesteric phases of DNA origamis.

Authors:  Maxime M C Tortora; Garima Mishra; Domen Prešern; Jonathan P K Doye
Journal:  Sci Adv       Date:  2020-07-29       Impact factor: 14.136

  9 in total

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