Literature DB >> 15737094

A stochastic model to analyze clonal data on multi-type cell populations.

Ollivier Hyrien1, Margot Mayer-Pröschel, Mark Noble, Andrei Yakovlev.   

Abstract

This article presents a stochastic model designed to analyze experimental data on the development of cell clones composed of two (or more) distinct types of cells. The proposed model is an extension of the traditional multi-type Bellman-Harris branching stochastic process allowing for nonidentical time-to-transformation distributions defined for different cell types. A simulated pseudo likelihood method has been developed for the parametric statistical inference from experimental data on cell clones under the proposed model. The method uses simulation-based approximations of the means and the variance-covariance matrices of cell counts. The proposed estimator for the vector of unknown parameters is strongly consistent and asymptotically normal under mild regularity conditions, while its variance-covariance matrix is estimated by the parametric bootstrap. A Monte Carlo Wald test is proposed for the test of hypotheses. Finite sample properties of the estimator have been studied by computer simulations. The model and associated methods of parametric inference have been applied to the analysis of proliferation and differentiation of cultured O-2A progenitor cells that play a key role in the development of the central nervous system. It follows from this analysis that the time to division of the progenitor cell and the time to its differentiation (into an oligodendrocyte) are not identically distributed. This biological finding suggests that a molecular event determining the type of cell transformation is more likely to occur at the start rather than at the end of the mitotic cycle.

Mesh:

Year:  2005        PMID: 15737094     DOI: 10.1111/j.0006-341X.2005.031210.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  20 in total

1.  A composite likelihood approach to the analysis of longitudinal clonal data on multitype cellular systems under an age-dependent branching process.

Authors:  Rui Chen; Ollivier Hyrien; Mark Noble; Margot Mayer-Pröschel
Journal:  Biostatistics       Date:  2010-08-23       Impact factor: 5.899

2.  Calculations for multi-type age-dependent binary branching processes.

Authors:  Graham Jones
Journal:  J Math Biol       Date:  2010-08-27       Impact factor: 2.259

3.  Modeling Cell Kinetics using Branching Processes with Non-Homogeneous Poisson Immigration.

Authors:  Ollivier Hyrien; Nikolay M Yanev
Journal:  C R Acad Bulg Sci       Date:  2010

4.  Stochastic modeling of stress erythropoiesis using a two-type age-dependent branching process with immigration.

Authors:  O Hyrien; S A Peslak; N M Yanev; J Palis
Journal:  J Math Biol       Date:  2014-07-03       Impact factor: 2.259

5.  Asymptotic behavior of cell populations described by two-type reducible age-dependent branching processes with non-homogeneous immigration().

Authors:  Ollivier Hyrien; Nikolay M Yanev
Journal:  Math Popul Stud       Date:  2012-10-05       Impact factor: 0.720

6.  Two-Type Reducible Age-Dependent Branching Processes With Non-Homogeneous Poisson Immigration.

Authors:  Ollivier Hyrien; Nikolay M Yanev
Journal:  C R Acad Bulg Sci       Date:  2011

7.  Mathematical and experimental approaches to identify and predict the effects of chemotherapy on neuroglial precursors.

Authors:  Ollivier Hyrien; Jörg Dietrich; Mark Noble
Journal:  Cancer Res       Date:  2010-11-05       Impact factor: 12.701

8.  An age-dependent branching process model for the analysis of CFSE-labeling experiments.

Authors:  Ollivier Hyrien; Rui Chen; Martin S Zand
Journal:  Biol Direct       Date:  2010-06-22       Impact factor: 4.540

9.  Quantifying T lymphocyte turnover.

Authors:  Rob J De Boer; Alan S Perelson
Journal:  J Theor Biol       Date:  2013-01-09       Impact factor: 2.691

10.  A test of homogeneity for age-dependent branching processes with immigration.

Authors:  Ollivier Hyrien; Nikolay M Yanev; Craig T Jordan
Journal:  Electron J Stat       Date:  2015-05-22       Impact factor: 1.125

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.