Literature DB >> 15734574

Developmental gene amplification: insights into DNA replication and gene expression.

Julie M Claycomb1, Terry L Orr-Weaver.   

Abstract

In the formation of a complex organism and the differentiation of specific cell types, there are often demands for high levels of particular gene products. These demands can be met by increasing transcription or translation, or by decreasing the rate of mRNA or protein turnover. Although these are the most common means to increase expression levels, there is another mechanism: gene amplification. Developmental gene amplification is a DNA replication-based process whereby specific genes are replicated above the copy number of surrounding sequences, resulting in an increase in the template available for transcription. Recent microarray studies in Drosophila melanogaster have identified two additional amplicons, suggesting that developmental gene amplification might be more widely used than was previously thought. Furthermore, work in both Drosophila and the related fly, Sciara coprophila, has yielded insights into the mechanisms, regulatory sequences and proteins controlling DNA replication during gene amplification, including a link between transcription factors and origin usage.

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Year:  2005        PMID: 15734574     DOI: 10.1016/j.tig.2005.01.009

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  60 in total

Review 1.  Regulation of DNA replication during development.

Authors:  Jared Nordman; Terry L Orr-Weaver
Journal:  Development       Date:  2012-02       Impact factor: 6.868

2.  Specific replication origins promote DNA amplification in fission yeast.

Authors:  Lee Kiang; Christian Heichinger; Stephen Watt; Jürg Bähler; Paul Nurse
Journal:  J Cell Sci       Date:  2010-08-24       Impact factor: 5.285

3.  RNA-dependent control of gene amplification.

Authors:  Gero Heyse; Franziska Jönsson; Wei-Jen Chang; Hans J Lipps
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

4.  Conservation of epigenetic regulation, ORC binding and developmental timing of DNA replication origins in the genus Drosophila.

Authors:  B R Calvi; B A Byrnes; A J Kolpakas
Journal:  Genetics       Date:  2007-11       Impact factor: 4.562

5.  Cyclin-dependent kinase inhibits reinitiation of a normal S-phase program during G2 in fission yeast.

Authors:  Lee Kiang; Christian Heichinger; Stephen Watt; Jürg Bähler; Paul Nurse
Journal:  Mol Cell Biol       Date:  2009-06-01       Impact factor: 4.272

6.  Maternal origins of developmental reproducibility.

Authors:  Mariela D Petkova; Shawn C Little; Feng Liu; Thomas Gregor
Journal:  Curr Biol       Date:  2014-05-22       Impact factor: 10.834

7.  Integrative analysis of gene amplification in Drosophila follicle cells: parameters of origin activation and repression.

Authors:  Jane C Kim; Jared Nordman; Fang Xie; Helena Kashevsky; Thomas Eng; Sharon Li; David M MacAlpine; Terry L Orr-Weaver
Journal:  Genes Dev       Date:  2011-07-01       Impact factor: 11.361

8.  Analysis of a Drosophila amplicon in follicle cells highlights the diversity of metazoan replication origins.

Authors:  Jane C Kim; Terry L Orr-Weaver
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-20       Impact factor: 11.205

9.  The microRNA miR-7 regulates Tramtrack69 in a developmental switch in Drosophila follicle cells.

Authors:  Yi-Chun Huang; Laila Smith; John Poulton; Wu-Min Deng
Journal:  Development       Date:  2013-01-16       Impact factor: 6.868

10.  Intrinsically bent DNA sites in the Drosophila melanogaster third chromosome amplified domain.

Authors:  Fabrícia Gimenes; Mariana Aprígio Assis; Adriana Fiorini; Vânia Aparecida Mareze; Nadia Monesi; Maria Aparecida Fernandez
Journal:  Mol Genet Genomics       Date:  2009-02-15       Impact factor: 3.291

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