| Literature DB >> 15725378 |
Osvaldo Zagordi1, Jean R Lobry.
Abstract
Because of the base pairing rules in DNA, some mutations experienced by a portion of DNA during its evolution result in the same substitution, as we can only observe differences in coupled nucleotides. Then, in the absence of a bias between the two DNA strands, a model with at most 6 different parameters instead of 12 is sufficient to study the evolutionary relationship between homologous sequences derived from a common ancestor. On the other hand the same symmetry reduces the number of independent observations which can be made. Such a reduction can in some cases invalidate the calculation of the parameters. A compromise between biologically acceptable hypotheses and tractability is introduced and a five-parameter reversible no-strand-bias condition (RNSB) is presented. The identifiability of the parameters under this model is shown by examples.Mesh:
Substances:
Year: 2005 PMID: 15725378 DOI: 10.1016/j.gene.2004.12.019
Source DB: PubMed Journal: Gene ISSN: 0378-1119 Impact factor: 3.688