Literature DB >> 15723636

The designability hypothesis and protein evolution.

Edo Kussell1.   

Abstract

The usage of protein folds in nature is known to be non-uniform: a few folds are used often, while most others are used relatively rarely. What makes one fold more successful than another? The designability explanation, which posits that successful folds have an exponentially larger number of compatible sequences, is critically reviewed, and compared with other structural and functional explanations. It is argued that designability is one component of fold fitness, but most likely not a dominant one.

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Year:  2005        PMID: 15723636     DOI: 10.2174/0929866053005881

Source DB:  PubMed          Journal:  Protein Pept Lett        ISSN: 0929-8665            Impact factor:   1.890


  5 in total

1.  Contact density affects protein evolutionary rate from bacteria to animals.

Authors:  Tong Zhou; D Allan Drummond; Claus O Wilke
Journal:  J Mol Evol       Date:  2008-04-01       Impact factor: 2.395

2.  Fast, cheap and out of control--Insights into thermodynamic and informatic constraints on natural protein sequences from de novo protein design.

Authors:  Joseph M Brisendine; Ronald L Koder
Journal:  Biochim Biophys Acta       Date:  2015-10-20

3.  Evolutionary innovations and the organization of protein functions in genotype space.

Authors:  Evandro Ferrada; Andreas Wagner
Journal:  PLoS One       Date:  2010-11-30       Impact factor: 3.240

4.  Fold designability, distribution, and disease.

Authors:  Philip Wong; Dmitrij Frishman
Journal:  PLoS Comput Biol       Date:  2006-05-05       Impact factor: 4.475

5.  High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design.

Authors:  Gautam Dantas; Colin Corrent; Steve L Reichow; James J Havranek; Ziad M Eletr; Nancy G Isern; Brian Kuhlman; Gabriele Varani; Ethan A Merritt; David Baker
Journal:  J Mol Biol       Date:  2006-12-02       Impact factor: 5.469

  5 in total

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