Literature DB >> 15722376

MtbRegList, a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis.

Pierre-Etienne Jacques1, Alain L Gervais, Mathieu Cantin, Jean-Francois Lucier, Guillaume Dallaire, Geneviève Drouin, Luc Gaudreau, Jean Goulet, Ryszard Brzezinski.   

Abstract

UNLABELLED: MtbRegList is a database dedicated to the analysis of gene expression and regulation data in Mycobacterium tuberculosis. It is designed to contain predicted and characterized regulatory DNA motifs cross-referenced with corresponding transcription factor(s), and experimentally identified transcription start sites. MtbRegList can also handle flexible and complex genomic search requests, besides having a noteworthy browsing capability. AVAILABILITY: MtbRegList is freely available at http://www.USherbrooke.ca/vers/MtbRegList

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Year:  2005        PMID： 15722376     DOI： 10.1093/bioinformatics/bti321

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  24 in total

Review 1.  Phylogenetic footprinting: a boost for microbial regulatory genomics.

Authors:  Pramod Katara; Atul Grover; Vinay Sharma
Journal:  Protoplasma       Date:  2011-11-24       Impact factor: 3.356

2.  Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.

Authors:  Sriram Chandrasekaran; Nathan D Price
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

Review 3.  Comparative genomic reconstruction of transcriptional regulatory networks in bacteria.

Authors:  Dmitry A Rodionov
Journal:  Chem Rev       Date:  2007-07-18       Impact factor: 60.622

4.  Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet.

Authors:  Jan Baumbach; Tobias Wittkop; Christiane Katja Kleindt; Andreas Tauch
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

5.  Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks.

Authors:  Jan Baumbach; Andreas Tauch; Sven Rahmann
Journal:  Brief Bioinform       Date:  2008-12-12       Impact factor: 11.622

6.  Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal.

Authors:  Ivan Erill
Journal:  J Bacteriol       Date:  2015-05-26       Impact factor: 3.490

7.  From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet.

Authors:  Justina Krawczyk; Thomas A Kohl; Alexander Goesmann; Jörn Kalinowski; Jan Baumbach
Journal:  Nucleic Acids Res       Date:  2009-06-03       Impact factor: 16.971

8.  RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.

Authors:  Pavel S Novichkov; Olga N Laikova; Elena S Novichkova; Mikhail S Gelfand; Adam P Arkin; Inna Dubchak; Dmitry A Rodionov
Journal:  Nucleic Acids Res       Date:  2009-11-01       Impact factor: 16.971

Review 9.  Regulation by transcription factors in bacteria: beyond description.

Authors:  Enrique Balleza; Lucia N López-Bojorquez; Agustino Martínez-Antonio; Osbaldo Resendis-Antonio; Irma Lozada-Chávez; Yalbi I Balderas-Martínez; Sergio Encarnación; Julio Collado-Vides
Journal:  FEMS Microbiol Rev       Date:  2009-01       Impact factor: 16.408

10.  Topological effects of data incompleteness of gene regulatory networks.

Authors:  Joaquin Sanz; Emanuele Cozzo; Javier Borge-Holthoefer; Yamir Moreno
Journal:  BMC Syst Biol       Date:  2012-08-25
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