Literature DB >> 15714268

Dynamic properties of regulatory motifs associated with induction of three temporal domains of memory in aplysia.

David B Pettigrew1, Paul Smolen, Douglas A Baxter, John H Byrne.   

Abstract

A model was developed to examine dynamical properties of regulatory motifs correlated with different temporal domains of memory. The model represents short-, intermediate-, and long-term phases of protein kinase A (PKA) activation, which appear related to corresponding phases of facilitation of the Aplysia sensorimotor synapse. The model also represents phosphorylation of the transcription factor CREB1 by PKA and consequent induction of the immediate-early gene Aplysia ubiquitin hydrolase (Ap-uch), which is essential for long-term synaptic facilitation (LTF). Simulations suggest mechanisms responsible for differing profiles of synaptic facilitation following massed vs. spaced exposures to 5-HT, and suggest a novel regulatory motif (gated positive feedback) is important for LTF. Simulations suggest zero-order ultrasensitivity may underlie a requirement of a threshold number of exposures to 5-HT for LTF induction. The model makes predictions for the dynamics of PKA activation and Ap-uch induction when MAP kinase is activated, or when repression of Ap-uch is relieved by inhibiting the transcription factor CREB2. This model may therefore be useful for understanding processes underlying memory formation in Aplysia and other systems.

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Year:  2005        PMID: 15714268     DOI: 10.1007/s10827-005-6557-0

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  84 in total

Review 1.  Memory--a century of consolidation.

Authors:  J L McGaugh
Journal:  Science       Date:  2000-01-14       Impact factor: 47.728

Review 2.  Function and regulation of CREB family transcription factors in the nervous system.

Authors:  Bonnie E Lonze; David D Ginty
Journal:  Neuron       Date:  2002-08-15       Impact factor: 17.173

Review 3.  Multiple serotonergic mechanisms contributing to sensitization in aplysia: evidence of diverse serotonin receptor subtypes.

Authors:  Demian Barbas; Luc DesGroseillers; Vincent F Castellucci; Thomas J Carew; Stéphane Marinesco
Journal:  Learn Mem       Date:  2003 Sep-Oct       Impact factor: 2.460

4.  Long-term sensitization in Aplysia: biophysical correlates in tail sensory neurons.

Authors:  K P Scholz; J H Byrne
Journal:  Science       Date:  1987-02-06       Impact factor: 47.728

5.  Multiple sensory neuronal correlates of site-specific sensitization in Aplysia.

Authors:  E T Walters
Journal:  J Neurosci       Date:  1987-02       Impact factor: 6.167

6.  Persistent activation of cAMP-dependent protein kinase by regulated proteolysis suggests a neuron-specific function of the ubiquitin system in Aplysia.

Authors:  D G Chain; A N Hegde; N Yamamoto; B Liu-Marsh; J H Schwartz
Journal:  J Neurosci       Date:  1995-11       Impact factor: 6.167

7.  Long-term sensitization of a defensive withdrawal reflex in Aplysia.

Authors:  H M Pinsker; W A Hening; T J Carew; E R Kandel
Journal:  Science       Date:  1973-12-07       Impact factor: 47.728

8.  cAMP response element-binding protein monomers cooperatively assemble to form dimers on DNA.

Authors:  X Wu; C Spiro; W G Owen; C T McMurray
Journal:  J Biol Chem       Date:  1998-08-14       Impact factor: 5.157

9.  Expression of a peptide inhibitor of protein phosphatase 1 increases phosphorylation and activity of CREB in NIH 3T3 fibroblasts.

Authors:  A S Alberts; M Montminy; S Shenolikar; J R Feramisco
Journal:  Mol Cell Biol       Date:  1994-07       Impact factor: 4.272

10.  A neuronal isoform of CPEB regulates local protein synthesis and stabilizes synapse-specific long-term facilitation in aplysia.

Authors:  Kausik Si; Maurizio Giustetto; Amit Etkin; Ruby Hsu; Agnieszka M Janisiewicz; Maria Conchetta Miniaci; Joung-Hun Kim; Huixiang Zhu; Eric R Kandel
Journal:  Cell       Date:  2003-12-26       Impact factor: 41.582

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  17 in total

1.  The sensitivity of memory consolidation and reconsolidation to inhibitors of protein synthesis and kinases: computational analysis.

Authors:  Yili Zhang; Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Learn Mem       Date:  2010-08-24       Impact factor: 2.460

Review 2.  Protein degradation and memory formation.

Authors:  Diasynou Fioravante; John H Byrne
Journal:  Brain Res Bull       Date:  2010-11-13       Impact factor: 4.077

3.  Bifurcation and singularity analysis of a molecular network for the induction of long-term memory.

Authors:  Hao Song; Paul Smolen; Evyatar Av-Ron; Douglas A Baxter; John H Byrne
Journal:  Biophys J       Date:  2006-01-20       Impact factor: 4.033

4.  Dynamics of a minimal model of interlocked positive and negative feedback loops of transcriptional regulation by cAMP-response element binding proteins.

Authors:  Hao Song; Paul Smolen; Evyatar Av-Ron; Douglas A Baxter; John H Byrne
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

5.  A model of the roles of essential kinases in the induction and expression of late long-term potentiation.

Authors:  Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Biophys J       Date:  2006-01-13       Impact factor: 4.033

6.  Interlinked dual-time feedback loops can enhance robustness to stochasticity and persistence of memory.

Authors:  Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-03-04

Review 7.  The right time to learn: mechanisms and optimization of spaced learning.

Authors:  Paul Smolen; Yili Zhang; John H Byrne
Journal:  Nat Rev Neurosci       Date:  2016-02       Impact factor: 34.870

8.  Prediction and validation of a mechanism to control the threshold for inhibitory synaptic plasticity.

Authors:  Yuichi Kitagawa; Tomoo Hirano; Shin-ya Kawaguchi
Journal:  Mol Syst Biol       Date:  2009-06-16       Impact factor: 11.429

9.  Quantitative description of the interactions among kinase cascades underlying long-term plasticity of Aplysia sensory neurons.

Authors:  Yili Zhang; Paul D Smolen; Leonard J Cleary; John H Byrne
Journal:  Sci Rep       Date:  2021-07-22       Impact factor: 4.379

10.  Modeling suggests combined-drug treatments for disorders impairing synaptic plasticity via shared signaling pathways.

Authors:  Paul Smolen; Marcelo A Wood; Douglas A Baxter; John H Byrne
Journal:  J Comput Neurosci       Date:  2020-11-11       Impact factor: 1.621

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