Literature DB >> 15713739

Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates.

Svava Osk Jónsdóttir1, Flemming Steen Jørgensen, Søren Brunak.   

Abstract

MOTIVATION: To gather information about available databases and chemoinformatics methods for prediction of properties relevant to the drug discovery and optimization process.
RESULTS: We present an overview of the most important databases with 2-dimensional and 3-dimensional structural information about drugs and drug candidates, and of databases with relevant properties. Access to experimental data and numerical methods for selecting and utilizing these data is crucial for developing accurate predictive in silico models. Many interesting predictive methods for classifying the suitability of chemical compounds as potential drugs, as well as for predicting their physico-chemical and ADMET properties have been proposed in recent years. These methods are discussed, and some possible future directions in this rapidly developing field are described.

Mesh:

Substances:

Year:  2005        PMID: 15713739     DOI: 10.1093/bioinformatics/bti314

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  17 in total

1.  Cyclodextrin KnowledgeBase a web-based service managing CD-ligand complexation data.

Authors:  Eszter Hazai; Istvan Hazai; Laszlo Demko; Sandor Kovacs; David Malik; Peter Akli; Peter Hari; Julianna Szeman; Eva Fenyvesi; Edina Benes; Lajos Szente; Zsolt Bikadi
Journal:  J Comput Aided Mol Des       Date:  2010-06-03       Impact factor: 3.686

2.  Data Sets Representative of the Structures and Experimental Properties of FDA-Approved Drugs.

Authors:  Dominique Douguet
Journal:  ACS Med Chem Lett       Date:  2018-01-29       Impact factor: 4.345

3.  Deficiencies in the reporting of VD and t(1/2) in the FDA approved chemotherapy drug inserts.

Authors:  Malcolm J D'Souza; Ghada J Alabed
Journal:  Pharm Rev       Date:  2010-02-03

4.  In silico analysis and molecular modeling of RNA polymerase, sigma S (RpoS) protein in Pseudomonas aeruginosa PAO1.

Authors:  Mansour Sedighi; Mohsen Moghoofei; Ebrahim Kouhsari; Abazar Pournajaf; Behzad Emadi; Masoud Tohidfar; Mehrdad Gholami
Journal:  Rep Biochem Mol Biol       Date:  2015-10

Review 5.  Machine learning for in silico virtual screening and chemical genomics: new strategies.

Authors:  Jean-Philippe Vert; Laurent Jacob
Journal:  Comb Chem High Throughput Screen       Date:  2008-09       Impact factor: 1.339

6.  Tunable machine vision-based strategy for automated annotation of chemical databases.

Authors:  Jungkap Park; Gus R Rosania; Kazuhiro Saitou
Journal:  J Chem Inf Model       Date:  2009-08       Impact factor: 4.956

Review 7.  Analytical tools and approaches for metabolite identification in early drug discovery.

Authors:  Yuan Chen; Mario Monshouwer; William L Fitch
Journal:  Pharm Res       Date:  2006-10-18       Impact factor: 4.580

8.  wwLigCSRre: a 3D ligand-based server for hit identification and optimization.

Authors:  O Sperandio; M Petitjean; P Tuffery
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

Review 9.  Cheminformatic Characterization of Natural Antimicrobial Products for the Development of New Lead Compounds.

Authors:  Samson Olaitan Oselusi; Alan Christoffels; Samuel Ayodele Egieyeh
Journal:  Molecules       Date:  2021-06-29       Impact factor: 4.411

10.  The chemical interactome space between the human host and the genetically defined gut metabotypes.

Authors:  Ulrik Plesner Jacobsen; Henrik Bjørn Nielsen; Falk Hildebrand; Jeroen Raes; Thomas Sicheritz-Ponten; Irene Kouskoumvekaki; Gianni Panagiotou
Journal:  ISME J       Date:  2012-11-22       Impact factor: 10.302

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.