Literature DB >> 15712117

Model reduction and analysis of robustness for the Wnt/beta-catenin signal transduction pathway.

Roland Krüger1, Reinhart Heinrich.   

Abstract

We present a framework for model reduction of signal transduction networks. The methods are explained by considering a recent model for Wnt/beta-catenin signalling which plays an important regulatory role in cell development and oncogenesis. The procedure results in a reduction of system variables and parameters while maintaining the ability of the model to describe experimental data and to predict the in-vivo behaviour of the pathway. Using metabolic control analysis we quantified the response of the pathway towards random fluctuations of model parameters. This allows to characterise the robustness of the pathway against perturbations in stimulated and unstimulated states. We show that robustness depends on structural as well as kinetic properties of the pathway.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15712117

Source DB:  PubMed          Journal:  Genome Inform        ISSN: 0919-9454


  11 in total

1.  Internal coarse-graining of molecular systems.

Authors:  Jérôme Feret; Vincent Danos; Jean Krivine; Russ Harmer; Walter Fontana
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-03       Impact factor: 11.205

2.  Multi-scale modeling of APC and [Formula: see text]-catenin regulation in the human colonic crypt.

Authors:  Brooks Emerick; Gilberto Schleiniger; Bruce M Boman
Journal:  J Math Biol       Date:  2018-01-04       Impact factor: 2.259

3.  The role of the hypothalamic-pituitary-adrenal axis in modulating seasonal changes in immunity.

Authors:  Kamau Pierre; Naomi Schlesinger; Ioannis P Androulakis
Journal:  Physiol Genomics       Date:  2016-06-24       Impact factor: 3.107

4.  A kinetic model to study the regulation of β-catenin, APC, and Axin in the human colonic crypt.

Authors:  Brooks Emerick; Gilberto Schleiniger; Bruce M Boman
Journal:  J Math Biol       Date:  2017-03-07       Impact factor: 2.259

5.  A multiple timescale analysis of a mathematical model of the Wnt/beta-catenin signalling pathway.

Authors:  Gary R Mirams; Helen M Byrne; John R King
Journal:  J Math Biol       Date:  2009-03-14       Impact factor: 2.259

6.  Feedback, Mass Conservation and Reaction Kinetics Impact the Robustness of Cellular Oscillations.

Authors:  Katharina Baum; Antonio Z Politi; Bente Kofahl; Ralf Steuer; Jana Wolf
Journal:  PLoS Comput Biol       Date:  2016-12-27       Impact factor: 4.475

7.  Modeling fructose-load-induced hepatic de-novo lipogenesis by model simplification.

Authors:  Richard J Allen; Cynthia J Musante
Journal:  Gene Regul Syst Bio       Date:  2017-04-12

8.  Computational modeling of the interplay between cadherin-mediated cell adhesion and Wnt signaling pathway.

Authors:  Jiawen Chen; Zhong-Ru Xie; Yinghao Wu
Journal:  PLoS One       Date:  2014-06-26       Impact factor: 3.240

9.  Interlocked positive and negative feedback network motifs regulate β-catenin activity in the adherens junction pathway.

Authors:  David J Klinke; Nicholas Horvath; Vanessa Cuppett; Yueting Wu; Wentao Deng; Rania Kanj
Journal:  Mol Biol Cell       Date:  2015-07-29       Impact factor: 4.138

10.  Paracrine and autocrine regulation of gene expression by Wnt-inhibitor Dickkopf in wild-type and mutant hepatocytes.

Authors:  Niklas Hartung; Uwe Benary; Jana Wolf; Bente Kofahl
Journal:  BMC Syst Biol       Date:  2017-10-13
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.