Literature DB >> 15712106

Interrelations between dynamical properties and structural characteristics of signal transduction networks.

Bernd Binder1, Reinhart Heinrich.   

Abstract

We present a theoretical approach for understanding the interrelations between dynamics and structure of signal transduction pathways. We consider large sets of networks with a specific number of kinases and phosphatases. Our methods are based on nonlinear differential equations and pathway dynamics is characterised in terms of signal amplification and signal duration. We show that networks with a high number of kinases, high connectivities and low phosphatase activities tend to be unstable and run, therefore, the risk to display autoactivation. Analysis of signal transduction pathways retrieved from databases reveals that several structural characteristics required for pathway stability are fulfilled for networks of very large size.

Mesh:

Substances:

Year:  2004        PMID: 15712106

Source DB:  PubMed          Journal:  Genome Inform        ISSN: 0919-9454


  7 in total

1.  Mathematical models of specificity in cell signaling.

Authors:  Lee Bardwell; Xiufen Zou; Qing Nie; Natalia L Komarova
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

2.  Goldbeter-Koshland model for open signaling cascades: a mathematical study.

Authors:  Yongfeng Li; Jeyaraman Srividhya
Journal:  J Math Biol       Date:  2010-01-06       Impact factor: 2.259

3.  Open cascades as simple solutions to providing ultrasensitivity and adaptation in cellular signaling.

Authors:  Jeyaraman Srividhya; Yongfeng Li; Joseph R Pomerening
Journal:  Phys Biol       Date:  2011-05-12       Impact factor: 2.583

4.  Ground state robustness as an evolutionary design principle in signaling networks.

Authors:  Onder Kartal; Oliver Ebenhöh
Journal:  PLoS One       Date:  2009-12-01       Impact factor: 3.240

5.  Dynamics and structure in cell signaling networks: off-state stability and dynamically positive cycles.

Authors:  Dániel Kondor; Gábor Vattay
Journal:  PLoS One       Date:  2013-03-08       Impact factor: 3.240

6.  A methodology for the structural and functional analysis of signaling and regulatory networks.

Authors:  Steffen Klamt; Julio Saez-Rodriguez; Jonathan A Lindquist; Luca Simeoni; Ernst D Gilles
Journal:  BMC Bioinformatics       Date:  2006-02-07       Impact factor: 3.169

7.  Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast.

Authors:  Stefania Vaga; Marti Bernardo-Faura; Thomas Cokelaer; Alessio Maiolica; Christopher A Barnes; Ludovic C Gillet; Björn Hegemann; Frank van Drogen; Hoda Sharifian; Edda Klipp; Matthias Peter; Julio Saez-Rodriguez; Ruedi Aebersold
Journal:  Mol Syst Biol       Date:  2014-12-09       Impact factor: 11.429

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.