Literature DB >> 15707929

The use of prokaryotic DNA methyltransferases as experimental and analytical tools in modern biology.

Yaroslav Buryanov1, Taras Shevchuk.   

Abstract

Prokaryotic DNA methyltransferases (MTases) are used as experimental and research tools in molecular biology and molecular genetics due to their ability to recognize and transfer methyl groups to target bases in specific DNA sequences. As a practical tool, prokaryotic DNA MTases can be used in recombinant DNA technology for in vitro alteration and enhancing of cleavage specificity of restriction endonucleases. The ability of prokaryotic DNA MTases to methylate cytosine residues in specific sequences, which are also methylated in eukaryotic DNA, makes it possible to use them as analytical reagent for determination of the site-specific level of methylation in eukaryotic DNA. In vivo DNA methylation by prokaryotic DNA MTases is used in different techniques for probing chromatin structure and protein-DNA interactions. Additional prospects are opened by development of the methods of DNA methylation targeted to predetermined DNA sequences by fusion of DNA MTases to DNA binding proteins. This review will discuss the application of prokaryotic DNA MTases of Type II in the methods and approaches mentioned above.

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Year:  2005        PMID: 15707929     DOI: 10.1016/j.ab.2004.02.048

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  7 in total

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Journal:  J Innate Immun       Date:  2008-07-02       Impact factor: 7.349

2.  Rapid and sensitive method to identify Mycobacterium avium subsp. paratuberculosis in cow's milk by DNA methylase genotyping.

Authors:  Silvia Leonor Mundo; Liliana Rosa Gilardoni; Federico José Hoffman; Osvaldo Jorge Lopez
Journal:  Appl Environ Microbiol       Date:  2012-12-28       Impact factor: 4.792

3.  Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity.

Authors:  Elizabeth G Wilbanks; Hugo Doré; Meredith H Ashby; Cheryl Heiner; Richard J Roberts; Jonathan A Eisen
Journal:  ISME J       Date:  2022-04-22       Impact factor: 11.217

4.  Homology modeling and molecular dynamics simulations of HgiDII methyltransferase in complex with DNA and S-adenosyl-methionine: catalytic mechanism and interactions with DNA.

Authors:  Juan A Castelán-Vega; Alicia Jiménez-Alberto; Rosa M Ribas-Aparicio
Journal:  J Mol Model       Date:  2009-12-22       Impact factor: 1.810

5.  Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans.

Authors:  Ky Sha; Sam G Gu; Luiz C Pantalena-Filho; Amy Goh; Jamie Fleenor; Daniel Blanchard; Chaya Krishna; Andrew Fire
Journal:  BMC Genomics       Date:  2010-08-06       Impact factor: 3.969

6.  Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community.

Authors:  Satoshi Hiraoka; Yusuke Okazaki; Mizue Anda; Atsushi Toyoda; Shin-Ichi Nakano; Wataru Iwasaki
Journal:  Nat Commun       Date:  2019-01-11       Impact factor: 14.919

7.  Large Diversity of Nonstandard Genes and Dynamic Evolution of Chloroplast Genomes in Siphonous Green Algae (Bryopsidales, Chlorophyta).

Authors:  Ma Chiela M Cremen; Frederik Leliaert; Vanessa R Marcelino; Heroen Verbruggen
Journal:  Genome Biol Evol       Date:  2018-04-01       Impact factor: 3.416

  7 in total

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