Literature DB >> 15703286

Tracking down noncoding RNAs.

Vincent Moulton1.   

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Year:  2005        PMID： 15703286      PMCID： PMC549017          DOI： 10.1073/pnas.0500129102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  17 in total

1.  MSARI: multiple sequence alignments for statistical detection of RNA secondary structure.

Authors:  Alex Coventry; Daniel J Kleitman; Bonnie Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-10       Impact factor: 11.205

2.  Aligning multiple genomic sequences with the threaded blockset aligner.

Authors:  Mathieu Blanchette; W James Kent; Cathy Riemer; Laura Elnitski; Arian F A Smit; Krishna M Roskin; Robert Baertsch; Kate Rosenbloom; Hiram Clawson; Eric D Green; David Haussler; Webb Miller
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

Review 3.  How do RNA folding algorithms work?

Authors:  Sean R Eddy
Journal:  Nat Biotechnol       Date:  2004-11       Impact factor: 54.908

4.  Inferring consensus structure from nucleic acid sequences.

Authors:  D K Chiu; T Kolodziejczak
Journal:  Comput Appl Biosci       Date:  1991-07

5.  A program for predicting significant RNA secondary structures.

Authors:  S V Le; J H Chen; K M Currey; J V Maizel
Journal:  Comput Appl Biosci       Date:  1988-03

Review 6.  On finding all suboptimal foldings of an RNA molecule.

Authors:  M Zuker
Journal:  Science       Date:  1989-04-07       Impact factor: 47.728

7.  Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors:  M Zuker; P Stiegler
Journal:  Nucleic Acids Res       Date:  1981-01-10       Impact factor: 16.971

8.  RNA sequence analysis using covariance models.

Authors:  S R Eddy; R Durbin
Journal:  Nucleic Acids Res       Date:  1994-06-11       Impact factor: 16.971

9.  ddbRNA: detection of conserved secondary structures in multiple alignments.

Authors:  Diego di Bernardo; Thomas Down; Tim Hubbard
Journal:  Bioinformatics       Date:  2003-09-01       Impact factor: 6.937

10.  Noncoding RNA gene detection using comparative sequence analysis.

Authors:  E Rivas; S R Eddy
Journal:  BMC Bioinformatics       Date:  2001-10-10       Impact factor: 3.169
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  9 in total

1.  Disease genes and gene regulation by microRNAs.

Authors:  Robert Roberts; Clifford J Steer
Journal:  J Cardiovasc Transl Res       Date:  2010-04-22       Impact factor: 4.132

Review 2.  Computational methods in noncoding RNA research.

Authors:  Ariane Machado-Lima; Hernando A del Portillo; Alan Mitchell Durham
Journal:  J Math Biol       Date:  2007-09-04       Impact factor: 2.259

3.  MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis.

Authors:  Betsy T Kren; Phillip Y-P Wong; Aaron Sarver; Xiaoxiao Zhang; Yan Zeng; Clifford J Steer
Journal:  RNA Biol       Date:  2009-01-01       Impact factor: 4.652

4.  Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.

Authors:  Yingfeng Wang; Amir Manzour; Pooya Shareghi; Timothy I Shaw; Ying-Wai Li; Russell L Malmberg; Liming Cai
Journal:  BMC Bioinformatics       Date:  2012-04-12       Impact factor: 3.169

5.  MicroRNA-181c targets Bcl-2 and regulates mitochondrial morphology in myocardial cells.

Authors:  Hongjiang Wang; Jing Li; Hongjie Chi; Fan Zhang; Xiaoming Zhu; Jun Cai; Xinchun Yang
Journal:  J Cell Mol Med       Date:  2015-04-20       Impact factor: 5.310

6.  Alignment of Noncoding Ribonucleic Acids with Pseudoknots Using Context-Sensitive Hidden Markov Model.

Authors:  Nayyer Mostaghim Bakhshayesh; Mousa Shamsi; Mohammad Hossein Sedaaghi; Hossein Ebrahimnezhad
Journal:  J Med Signals Sens       Date:  2019-10-24

7.  Riboswitch detection using profile hidden Markov models.

Authors:  Payal Singh; Pradipta Bandyopadhyay; Sudha Bhattacharya; A Krishnamachari; Supratim Sengupta
Journal:  BMC Bioinformatics       Date:  2009-10-08       Impact factor: 3.169

8.  Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human.

Authors:  Zhaolei Zhang; Andy Wing Chun Pang; Mark Gerstein
Journal:  BMC Evol Biol       Date:  2007-02-08       Impact factor: 3.260

9.  Development of a new sequential block finding strategy for detection of conserved sequences in riboswitches.

Authors:  Faegheh Golabi; Mousa Shamsi; Mohammad Hosein Sedaaghi; Abolfazl Barzegar; Mohammad Saeid Hejazi
Journal:  Bioimpacts       Date:  2017-08-30
  9 in total

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