Literature DB >> 15701451

Genomic studies of transcription factor-DNA interactions.

Devanjan Sikder1, Thomas Kodadek.   

Abstract

A central issue in the regulation of gene expression is the physical association of transcription factors with relevant promoter sequences. Recently, technological advances have allowed researchers to analyze these processes on a genomic scale. In particular, the combination of the chromatin immunoprecipitation (ChIP) technique with microarray analysis (the 'ChIP to chip' experiment) is providing a wealth of new and surprising data on transcription factor-chromatin interactions. These advances are reviewed here. We also discuss future challenges in the area.

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Year:  2005        PMID: 15701451     DOI: 10.1016/j.cbpa.2004.12.008

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  19 in total

Review 1.  DNA-protein interactions: methods for detection and analysis.

Authors:  Bipasha Dey; Sameer Thukral; Shruti Krishnan; Mainak Chakrobarty; Sahil Gupta; Chanchal Manghani; Vibha Rani
Journal:  Mol Cell Biochem       Date:  2012-03-08       Impact factor: 3.396

2.  Defining the sequence-recognition profile of DNA-binding molecules.

Authors:  Christopher L Warren; Natasha C S Kratochvil; Karl E Hauschild; Shane Foister; Mary L Brezinski; Peter B Dervan; George N Phillips; Aseem Z Ansari
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-17       Impact factor: 11.205

Review 3.  DNA microarray technologies for measuring protein-DNA interactions.

Authors:  Martha L Bulyk
Journal:  Curr Opin Biotechnol       Date:  2006-07-12       Impact factor: 9.740

4.  Chromatin immunoprecipitation and microarray-based analysis of protein location.

Authors:  Tong Ihn Lee; Sarah E Johnstone; Richard A Young
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

5.  Electrical detection of TATA binding protein at DNA-modified microelectrodes.

Authors:  Alon A Gorodetsky; Ali Ebrahim; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

Review 6.  The current state of chromatin immunoprecipitation.

Authors:  Philippe Collas
Journal:  Mol Biotechnol       Date:  2010-05       Impact factor: 2.695

7.  Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites.

Authors:  Alan M Moses
Journal:  BMC Evol Biol       Date:  2009-12-09       Impact factor: 3.260

8.  Identification of transcription factor-DNA interactions using chromatin immunoprecipitation assays.

Authors:  Liping Nie; Ana E Vázquez; Ebenezer N Yamoah
Journal:  Methods Mol Biol       Date:  2009

9.  Shuffling of promoters for multiple genes to optimize xylose fermentation in an engineered Saccharomyces cerevisiae strain.

Authors:  Chenfeng Lu; Thomas Jeffries
Journal:  Appl Environ Microbiol       Date:  2007-08-10       Impact factor: 4.792

10.  Discovery of cis-elements between sorghum and rice using co-expression and evolutionary conservation.

Authors:  Xi Wang; Georg Haberer; Klaus F X Mayer
Journal:  BMC Genomics       Date:  2009-06-26       Impact factor: 3.969

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