Literature DB >> 15700244

Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25-27(th) October, 2004.

Sandra Orchard1, Henning Hermjakob, Pierre-Alain Binz, Christine Hoogland, Chris F Taylor, Weimin Zhu, Randall K Julian, Rolf Apweiler.   

Abstract

The increasing volume of proteomics data currently being generated by increasingly high-throughput methodologies has led to an increasing need for methods by which such data can be accurately described, stored and exchanged between experimental researchers and data repositories. Work by the Proteomics Standards Initiative of the Human Proteome Organisation has laid the foundation for the development of standards by which experimental design can be described and data exchange facilitated. The progress of these efforts, and the direct benefits already accruing from them, were described at a plenary session of the 3(rd) Annual HUPO congress. Parallel sessions allowed the three work groups to present their progress to interested parties and to collect feedback from groups already implementing the available formats.

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Year:  2005        PMID: 15700244     DOI: 10.1002/pmic.200401158

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  8 in total

1.  The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards.

Authors:  J Alberto Medina-Aunon; Salvador Martínez-Bartolomé; Miguel A López-García; Emilio Salazar; Rosana Navajas; Andrew R Jones; Alberto Paradela; Juan P Albar
Journal:  Mol Cell Proteomics       Date:  2011-10       Impact factor: 5.911

2.  Efficient analysis and extraction of MS/MS result data from Mascot result files.

Authors:  Florian Grosse-Coosmann; Andreas M Boehm; Albert Sickmann
Journal:  BMC Bioinformatics       Date:  2005-12-07       Impact factor: 3.169

3.  Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow.

Authors:  Hiraku Morisawa; Mikako Hirota; Tosifusa Toda
Journal:  BMC Bioinformatics       Date:  2006-10-04       Impact factor: 3.169

4.  A uniform proteomics MS/MS analysis platform utilizing open XML file formats.

Authors:  Andrew Keller; Jimmy Eng; Ning Zhang; Xiao-jun Li; Ruedi Aebersold
Journal:  Mol Syst Biol       Date:  2005-08-02       Impact factor: 11.429

5.  GNU polyxmass: a software framework for mass spectrometric simulations of linear (bio-)polymeric analytes.

Authors:  Filippo Rusconi
Journal:  BMC Bioinformatics       Date:  2006-04-27       Impact factor: 3.169

6.  Challenges in the analysis of mass-throughput data: a technical commentary from the statistical machine learning perspective.

Authors:  Constantin F Aliferis; Alexander Statnikov; Ioannis Tsamardinos
Journal:  Cancer Inform       Date:  2007-02-16

7.  The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data.

Authors:  B D Pascal; M J Chalmers; S A Busby; C C Mader; M R Southern; N F Tsinoremas; P R Griffin
Journal:  BMC Bioinformatics       Date:  2007-05-16       Impact factor: 3.169

8.  MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Authors:  Andrew Chatr-aryamontri; Samuel Kerrien; Jyoti Khadake; Sandra Orchard; Arnaud Ceol; Luana Licata; Luisa Castagnoli; Stefano Costa; Cathy Derow; Rachael Huntley; Bruno Aranda; Catherine Leroy; Dave Thorneycroft; Rolf Apweiler; Gianni Cesareni; Henning Hermjakob
Journal:  Genome Biol       Date:  2008-09-01       Impact factor: 13.583

  8 in total

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