Literature DB >> 15697865

Spatial distribution of competing ions around DNA in solution.

K Andresen1, R Das, H Y Park, H Smith, L W Kwok, J S Lamb, E J Kirkland, D Herschlag, K D Finkelstein, L Pollack.   

Abstract

The competition of monovalent and divalent cations for proximity to negatively charged DNA is of biological importance and can provide strong constraints for theoretical treatments of polyelectrolytes. Resonant x-ray scattering experiments have allowed us to monitor the number and distribution of each cation in a mixed ion cloud around DNA. These measurements provide experimental evidence to support a general theoretical prediction: the normalized distribution of each ion around polyelectrolytes remains constant when ions are mixed at different ratios. In addition, the amplitudes of the scattering signals throughout the competition provide a measurement of the surface concentration parameter that predicts the competition behavior of these cations. The data suggest that ion size needs to be taken into account in applying Poisson-Boltzmann treatments to polyelectrolytes such as DNA.

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Year:  2004        PMID: 15697865     DOI: 10.1103/PhysRevLett.93.248103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  40 in total

1.  The Role of Correlation and Solvation in Ion Interactions with B-DNA.

Authors:  Maria L Sushko; Dennis G Thomas; Suzette A Pabit; Lois Pollack; Alexey V Onufriev; Nathan A Baker
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

2.  Multiscale methods for computational RNA enzymology.

Authors:  Maria T Panteva; Thakshila Dissanayake; Haoyuan Chen; Brian K Radak; Erich R Kuechler; George M Giambaşu; Tai-Sung Lee; Darrin M York
Journal:  Methods Enzymol       Date:  2015-01-22       Impact factor: 1.600

3.  Charge structure and counterion distribution in hexagonal DNA liquid crystal.

Authors:  Liang Dai; Yuguang Mu; Lars Nordenskiöld; Alain Lapp; Johan R C van der Maarel
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

4.  Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory.

Authors:  Vincent B Chu; Yu Bai; Jan Lipfert; Daniel Herschlag; Sebastian Doniach
Journal:  Biophys J       Date:  2007-06-29       Impact factor: 4.033

5.  Mono- and trivalent ions around DNA: a small-angle scattering study of competition and interactions.

Authors:  Kurt Andresen; Xiangyun Qiu; Suzette A Pabit; Jessica S Lamb; Hye Yoon Park; Lisa W Kwok; Lois Pollack
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

Review 6.  Importance of diffuse metal ion binding to RNA.

Authors:  Zhi-Jie Tan; Shi-Jie Chen
Journal:  Met Ions Life Sci       Date:  2011

Review 7.  RNA folding: conformational statistics, folding kinetics, and ion electrostatics.

Authors:  Shi-Jie Chen
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

Review 8.  Unwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs.

Authors:  Vincent B Chu; Daniel Herschlag
Journal:  Curr Opin Struct Biol       Date:  2008-06       Impact factor: 6.809

9.  Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids.

Authors:  Yu Bai; Max Greenfeld; Kevin J Travers; Vincent B Chu; Jan Lipfert; Sebastian Doniach; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2007-11-09       Impact factor: 15.419

10.  Salt-dependent folding energy landscape of RNA three-way junction.

Authors:  Gengsheng Chen; Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

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