Literature DB >> 15697631

Nucleation and growth in one dimension. I. The generalized Kolmogorov-Johnson-Mehl-Avrami model.

Suckjoon Jun1, Haiyang Zhang, John Bechhoefer.   

Abstract

Motivated by a recent application of the Kolmogorov-Johnson-Mehl-Avrami (KJMA) model to the study of DNA replication, we consider the one-dimensional (1D) version of this model. We generalize previous work to the case where the nucleation rate is an arbitrary function I (t) and obtain analytical results for the time-dependent distributions of various quantities (such as the island distribution). We also present improved computer simulation algorithms to study the 1D KJMA model. The analytical results and simulations are in excellent agreement.

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Year:  2005        PMID: 15697631     DOI: 10.1103/PhysRevE.71.011908

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  12 in total

1.  DNA replication origins fire stochastically in fission yeast.

Authors:  Prasanta K Patel; Benoit Arcangioli; Stephen P Baker; Aaron Bensimon; Nicholas Rhind
Journal:  Mol Biol Cell       Date:  2005-10-26       Impact factor: 4.138

2.  Structural insights into the cubic-hexagonal phase transition kinetics of monoolein modulated by sucrose solutions.

Authors:  Caleb W Reese; Zachariah I Strango; Zachary R Dell; Stephanie Tristram-Nagle; Paul E Harper
Journal:  Phys Chem Chem Phys       Date:  2015-03-11       Impact factor: 3.676

3.  Mathematical modelling of eukaryotic DNA replication.

Authors:  Olivier Hyrien; Arach Goldar
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

Review 4.  Replication timing and its emergence from stochastic processes.

Authors:  John Bechhoefer; Nicholas Rhind
Journal:  Trends Genet       Date:  2012-04-18       Impact factor: 11.639

5.  Just-in-time DNA replication.

Authors:  Suckjoon Jun; Nick Rhind
Journal:  Physics (College Park Md)       Date:  2008-10-27

6.  Organization of DNA Replication Origin Firing in Xenopus Egg Extracts: The Role of Intra-S Checkpoint.

Authors:  Diletta Ciardo; Olivier Haccard; Hemalatha Narassimprakash; Jean-Michel Arbona; Olivier Hyrien; Benjamin Audit; Kathrin Marheineke; Arach Goldar
Journal:  Genes (Basel)       Date:  2021-08-09       Impact factor: 4.096

7.  Mathematical modeling of genome replication.

Authors:  Renata Retkute; Conrad A Nieduszynski; Alessandro de Moura
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-09-17

8.  Modeling genome-wide replication kinetics reveals a mechanism for regulation of replication timing.

Authors:  Scott Cheng-Hsin Yang; Nicholas Rhind; John Bechhoefer
Journal:  Mol Syst Biol       Date:  2010-08-24       Impact factor: 11.429

9.  Modeling inhomogeneous DNA replication kinetics.

Authors:  Michel G Gauthier; Paolo Norio; John Bechhoefer
Journal:  PLoS One       Date:  2012-03-07       Impact factor: 3.240

10.  A chromatin structure-based model accurately predicts DNA replication timing in human cells.

Authors:  Yevgeniy Gindin; Manuel S Valenzuela; Mirit I Aladjem; Paul S Meltzer; Sven Bilke
Journal:  Mol Syst Biol       Date:  2014-03-28       Impact factor: 11.429

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