Literature DB >> 15697211

Redox equilibria in hydroxylamine oxidoreductase. Electrostatic control of electron redistribution in multielectron oxidative processes.

Igor V Kurnikov1, Mark A Ratner, A Andrew Pacheco.   

Abstract

We report results of continuum electrostatics calculations of the cofactor redox potentials, and of the titratable group pK(a) values, in hydroxylamine oxidoreductase (HAO). A picture of a sophisticated multicomponent control of electron flow in the protein emerged from the studies. First, we found that neighboring heme cofactors strongly interact electrostatically, with energies of 50-100 mV. Thus, cofactor redox potentials depend on the oxidation state of other cofactors, and cofactor redox potentials in the active (partially oxidized) enzyme differ substantially from the values obtained in electrochemical redox titration experiments. We found that, together, solvent-exposed heme 1 (having a large negative redox potential) and heme 2 (having a large positive redox potential) form a lock for electrons generated during the oxidation reaction The attachment of HAO's physiological electron transfer partner cytochrome c(554) results in a positive shift in the redox potential of heme 1, and "opens the electron gate". Electrons generated as a result of hydroxylamine oxidation travel to heme 3 and heme 8, which have redox potentials close to 0 mV versus NHE (this result is in partial disagreement with an existing experimental redox potential assignment). The closeness of hemes 3 and 8 from different enzyme subunits allows redistribution of the four electrons generated as a result of hydroxylamine oxidation, among the three enzyme subunits. For the multielectron oxidation process to be maximally efficient, the redox potentials of the electron-accepting cofactors should be roughly equal, and electrostatic interactions between extra electrons on these cofactors should be minimal. The redox potential assignments presented in the paper satisfy this general rule.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15697211     DOI: 10.1021/bi048060v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  The effect of detergents and lipids on the properties of the outer-membrane protein OmcA from Shewanella oneidensis.

Authors:  Gregory J Bodemer; William A Antholine; Liana V Basova; Daad Saffarini; A Andrew Pacheco
Journal:  J Biol Inorg Chem       Date:  2010-03-13       Impact factor: 3.358

2.  Correlations between the Electronic Properties of Shewanella oneidensis Cytochrome c Nitrite Reductase (ccNiR) and Its Structure: Effects of Heme Oxidation State and Active Site Ligation.

Authors:  Natalia Stein; Daniel Love; Evan T Judd; Sean J Elliott; Brian Bennett; A Andrew Pacheco
Journal:  Biochemistry       Date:  2015-06-12       Impact factor: 3.162

3.  Laue crystal structure of Shewanella oneidensis cytochrome c nitrite reductase from a high-yield expression system.

Authors:  Matthew Youngblut; Evan T Judd; Vukica Srajer; Bilal Sayyed; Tyler Goelzer; Sean J Elliott; Marius Schmidt; A Andrew Pacheco
Journal:  J Biol Inorg Chem       Date:  2012-03-02       Impact factor: 3.358

4.  Upon further analysis, neither cytochrome c554 from Nitrosomonas europaea nor its F156A variant display NO reductase activity, though both proteins bind nitric oxide reversibly.

Authors:  Jennifer M McGarry; A Andrew Pacheco
Journal:  J Biol Inorg Chem       Date:  2018-06-26       Impact factor: 3.358

5.  A Synthetic Biology Approach to Engineering Living Photovoltaics.

Authors:  N Schuergers; C Werlang; C M Ajo-Franklin; A A Boghossian
Journal:  Energy Environ Sci       Date:  2017-04-04       Impact factor: 38.532

6.  Membrane tetraheme cytochrome c(m552) of the ammonia-oxidizing nitrosomonas europaea: a ubiquinone reductase.

Authors:  Hyung J Kim; Anna Zatsman; Anup K Upadhyay; Mark Whittaker; David Bergmann; Michael P Hendrich; Alan B Hooper
Journal:  Biochemistry       Date:  2008-06-24       Impact factor: 3.162

Review 7.  Multi-heme proteins: nature's electronic multi-purpose tool.

Authors:  Kathryn D Bewley; Katie E Ellis; Mackenzie A Firer-Sherwood; Sean J Elliott
Journal:  Biochim Biophys Acta       Date:  2013-04-02

8.  Soft wall ion channel in continuum representation with application to modeling ion currents in α-hemolysin.

Authors:  Nikolay A Simakov; Maria G Kurnikova
Journal:  J Phys Chem B       Date:  2010-10-28       Impact factor: 2.991

9.  pH-triggered conformational switching of the diphtheria toxin T-domain: the roles of N-terminal histidines.

Authors:  Igor V Kurnikov; Alexander Kyrychenko; Jose C Flores-Canales; Mykola V Rodnin; Nikolay Simakov; Mauricio Vargas-Uribe; Yevgen O Posokhov; Maria Kurnikova; Alexey S Ladokhin
Journal:  J Mol Biol       Date:  2013-05-03       Impact factor: 5.469

10.  Kinetic and product distribution analysis of NO* reductase activity in Nitrosomonas europaea hydroxylamine oxidoreductase.

Authors:  Joshua Kostera; Matthew D Youngblut; Jeffrey M Slosarczyk; A Andrew Pacheco
Journal:  J Biol Inorg Chem       Date:  2008-06-14       Impact factor: 3.358

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.