| Literature DB >> 15693956 |
David I R Holmes1, Ian Zachary.
Abstract
Vascular endothelial growth factors (VEGFs) are a family of secreted polypeptides with a highly conserved receptor-binding cystine-knot structure similar to that of the platelet-derived growth factors. VEGF-A, the founding member of the family, is highly conserved between animals as evolutionarily distant as fish and mammals. In vertebrates, VEGFs act through a family of cognate receptor kinases in endothelial cells to stimulate blood-vessel formation. VEGF-A has important roles in mammalian vascular development and in diseases involving abnormal growth of blood vessels; other VEGFs are also involved in the development of lymphatic vessels and disease-related angiogenesis. Invertebrate homologs of VEGFs and VEGF receptors have been identified in fly, nematode and jellyfish, where they function in developmental cell migration and neurogenesis. The existence of VEGF-like molecules and their receptors in simple invertebrates without a vascular system indicates that this family of growth factors emerged at a very early stage in the evolution of multicellular organisms to mediate primordial developmental functions.Entities:
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Year: 2005 PMID: 15693956 PMCID: PMC551528 DOI: 10.1186/gb-2005-6-2-209
Source DB: PubMed Journal: Genome Biol ISSN: 1474-7596 Impact factor: 13.583
The human VEGF family and related proteins from Drosophila and Orf virus
| Species (strain) and gene name | Number ofexons | Chromosomal location* | Accession number† | References | Homologs‡ found in other species |
| Human | 8 | 6p12 | NM_003376 | [59] | |
| Human | 7 | 11q13 | NM_003377 | [23] | |
| Human | 7 | 4q34.1-q34.3 | NM_005429 | [60] | |
| Human | 7 | Xp22.31 | NM_004469 | [61] | |
| Human | 7 | 14q24-q31 | NM_002632 | [22] | |
| - | - | AF106020 | - | ||
| - | - | S67520 | - | ||
| - | - | S67522 | - | ||
| 6 | X 17E1-17E6 | NM_078683 | [14-16] | ||
| 5 | 2L 27E1 | NM_078775 | [16] | - | |
| 6 | 2L 27E1-27E2 | NM_078776 | [16] | - |
*Chromosome locations of human and Drosophila genes are from Entrez Gene and FlyBase. †Accession numbers are from RefSeq and GenBank.
‡Homolog data are from HomoloGene, Entrez Gene and [13].§Putative homolog identified by survey of C. elegans genome [17]. ¶Possible homolog [18].
Figure 1Comparison of human VEGFs with PDGFs and related sequences from Drosophila and Orf virus. Abbreviations: h, human; dm, Drosophila melanogaster, ov, Orf virus. (a) An alignment of the deduced amino-acid sequences of the VEGF/PDGF homology domain (VHD) from various human, Drosophila and Orf virus VEGFs and PGDFs. {online only} Sequence data were obtained from the GenBank and SwissProt databases; the multiple alignment was generated using MultAlin and further optimized manually. Residues that are conserved in at least 50% of the aligned sequences are shaded in green; those fully conserved are in yellow. The eight cysteine residues that constitute the cystine-knot structure [12] are denoted by asterisks below the sequences. (b) Predicted evolutionary relationships between human, Drosophila and Orf virus VEGFs and PDGFs. VHD sequences from (a) were aligned using ClustalW and the neighbor-joining method was used to construct a phylogenetic tree with TreeView. Branch lengths are proportional to the estimated evolutionary distance between protein sequences.
Figure 2Gene organization and encoded functional domains of the human VEGF genes and related genes from Drosophila. Exons, represented by boxes, are numbered and the length of coding sequence in each is marked below in base-pairs. Start (ATG) and stop (TAA, TAG, TGA) codons are marked, and the length of each encoded unprocessed polypeptide including the signal peptide (in amino-acid residues) is indicated in parentheses. Exons are drawn to scale, except for the last exon of hVEGF-A, which is longer than 1 kilobase (kb). Introns, represented by horizontal lines, are not drawn to scale. Alternative exons and splicing patterns are not shown, with the exception of hVEGF-B, in which isoforms result from alternative splicing of exon 6 [23]. Arrows represent proteolytic cleavage sites. Abbreviations: 3', 3' untranslated region (UTR); 5', 5' UTR; CP, region encoding the carboxy-terminal propeptide domain; H, encodes the heparin-binding domain; N, encodes the NRP1/heparin-binding domain; NP, encodes the amino-terminal propeptide domain; SP, signal peptide; VHD, encodes the VEGF/PDGF homology domain. Information was compiled from published literature [14-16,22,23,59-61] and the Entrez Gene, RefSeq, GenBank and SwissProt databases.
Isoforms of human VEGF-A
| Isoform | Size (amino acids) | Coding exons* | Features |
| VEGF-A121 | 121 | 1-5, 8 | Secreted |
| VEGF-A145 | 145 | 1-6, 8 | Binds NRP2 but not NRP1; secreted |
| VEGF-A165 | 165 | 1-5, 7, 8 | The most abundant and biologically active isoform; secreted; binds NRP1 and NRP2 |
| VEGF-A165b | 165 | 1-5, 7, alternative exon 8 | Secreted, endogenous inhibitory form of VEGF-A165 |
| VEGF-A183 | 183 | 1-5, short exon 6, 7, 8 | Sequestered in ECM but released by cleavage |
| VEGF-A189 | 189 | 1-8 | Sequestered in ECM but released by cleavage |
| VEGF-A206 | 206 | 1-8 plus additional exon 6-encoded sequence | Sequestered in ECM but released by cleavage |
*All isoforms contain exons 1-5 and 8, except VEGF-A165b, which contains an alternative exon 8. Abbreviations: ECM, extracellular matrix; NRP, neuropilin.