Literature DB >> 15693628

Introns: mighty elements from the RNA world.

Alexei Fedorov, Larisa Fedorova.   

Abstract

The discovery of RNA-based enzymatic activity by Thomas Cech's and Sidney Altman's laboratories was a momentous event that led Walter Gilbert to the concept of an "RNA world"--a primitive ancient stage of life that existed before the appearance of DNA and protein molecules. A year later, Gilbert formulated "the exon theory of genes," which hypothesized that introns are very ancient genetic elements present at the earliest stages of life in the RNA world. This theory has been fiercely debated and still has vigorous supporters and opponents. In this communication, we explore peculiarities in the RNA-protein world and their effect on intron-exon structures. We demonstrate that these peculiarities, which exist in the absence of DNA, could shed light on introns' original functions as well as the important role they might have played in the origin of life. For ancient DNA-lacking cells, a crucial problem existed in distinguishing two distinct subsets of RNAs: those messenger molecules coding for proteins and those heritable genetic molecules complementary to messenger RNAs that propagate the genetic information through generations. We propose that ancient introns could act as markers of RNA subsets, directing them to different functions.

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Year:  2004        PMID: 15693628     DOI: 10.1007/s00239-004-2660-5

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  19 in total

1.  The origin of the eukaryotic cell: a genomic investigation.

Authors:  Hyman Hartman; Alexei Fedorov
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

Review 2.  The evolution of spliceosomal introns.

Authors:  Michael Lynch; Aaron O Richardson
Journal:  Curr Opin Genet Dev       Date:  2002-12       Impact factor: 5.578

Review 3.  Ancient phylogenetic relationships.

Authors:  Simonetta Gribaldo; Hervé Philippe
Journal:  Theor Popul Biol       Date:  2002-06       Impact factor: 1.570

Review 4.  Introns in gene evolution.

Authors:  Larisa Fedorova; Alexei Fedorov
Journal:  Genetica       Date:  2003-07       Impact factor: 1.082

5.  Some consequences of the RNA world hypothesis.

Authors:  Leslie E Orgel
Journal:  Orig Life Evol Biosph       Date:  2003-04       Impact factor: 1.950

Review 6.  Early evolution and the origin of eukaryotes.

Authors:  M L Sogin
Journal:  Curr Opin Genet Dev       Date:  1991-12       Impact factor: 5.578

Review 7.  The recent origins of introns.

Authors:  J D Palmer; J M Logsdon
Journal:  Curr Opin Genet Dev       Date:  1991-12       Impact factor: 5.578

8.  An RNA splicing enhancer-like sequence is a component of a splicing inhibitor element from Rous sarcoma virus.

Authors:  L M McNally; M T McNally
Journal:  Mol Cell Biol       Date:  1998-06       Impact factor: 4.272

Review 9.  Molecular evolution: recent cases of spliceosomal intron gain?

Authors:  J M Logsdon; A Stoltzfus; W F Doolittle
Journal:  Curr Biol       Date:  1998 Jul 30-Aug 13       Impact factor: 10.834

10.  The exon theory of genes.

Authors:  W Gilbert
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987
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  6 in total

1.  An overview of the introns-first theory.

Authors:  David Penny; Marc P Hoeppner; Anthony M Poole; Daniel C Jeffares
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

2.  Primal eukaryogenesis: on the communal nature of precellular States, ancestral to modern life.

Authors:  Richard Egel
Journal:  Life (Basel)       Date:  2012-01-23

3.  The transcriptional trajectories of pluripotency and differentiation comprise genes with antithetical architecture and repetitive-element content.

Authors:  Aristeidis G Telonis; Isidore Rigoutsos
Journal:  BMC Biol       Date:  2021-03-25       Impact factor: 7.431

4.  The peculiarities of large intron splicing in animals.

Authors:  Samuel Shepard; Mark McCreary; Alexei Fedorov
Journal:  PLoS One       Date:  2009-11-16       Impact factor: 3.240

5.  Protecting exons from deleterious R-loops: a potential advantage of having introns.

Authors:  Deng-Ke Niu
Journal:  Biol Direct       Date:  2007-04-25       Impact factor: 4.540

6.  Conservation in first introns is positively associated with the number of exons within genes and the presence of regulatory epigenetic signals.

Authors:  Seung Gu Park; Sridhar Hannenhalli; Sun Shim Choi
Journal:  BMC Genomics       Date:  2014-06-26       Impact factor: 3.969

  6 in total

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