Literature DB >> 15691852

PROTEIOS: an open source proteomics initiative.

Per Gärdén1, Rikard Alm, Jari Häkkinen.   

Abstract

SUMMARY: PROTEIOS is an initiative for the development of a comprehensive open source system for storage, organization, analysis and annotation of proteomics experiments. The PROTEIOS platform is based on commonly acknowledged principles for proteomics data publishing. AVAILABILITY: http://www.proteios.org

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Year:  2005        PMID： 15691852     DOI： 10.1093/bioinformatics/bti291

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  An efficient data format for mass spectrometry-based proteomics.

Authors:  Anuj R Shah; Jennifer Davidson; Matthew E Monroe; Anoop M Mayampurath; William F Danielson; Yan Shi; Aaron C Robinson; Brian H Clowers; Mikhail E Belov; Gordon A Anderson; Richard D Smith
Journal:  J Am Soc Mass Spectrom       Date:  2010-07-07       Impact factor: 3.109

2.  PRODIS: a proteomics data management system with support to experiment tracking.

Authors:  Alessandra Faria-Campos; Herbert Fernandes-Rausch; Celina Val; Peter Thorun; Vinicius Abreu; Paulo Henrique Batista; Paulo Henrique Mendonça; Vinicius Alves; Maíra Ribeiro Rodrigues; Adriano Pimenta; Glória Franco; Sérgio Vale Aguiar Campos
Journal:  BMC Genomics       Date:  2011-12-22       Impact factor: 3.969

3.  TraML--a standard format for exchange of selected reaction monitoring transition lists.

Authors:  Eric W Deutsch; Matthew Chambers; Steffen Neumann; Fredrik Levander; Pierre-Alain Binz; Jim Shofstahl; David S Campbell; Luis Mendoza; David Ovelleiro; Kenny Helsens; Lennart Martens; Ruedi Aebersold; Robert L Moritz; Mi-Youn Brusniak
Journal:  Mol Cell Proteomics       Date:  2011-12-12       Impact factor: 5.911

4.  Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow.

Authors:  Hiraku Morisawa; Mikako Hirota; Tosifusa Toda
Journal:  BMC Bioinformatics       Date:  2006-10-04       Impact factor: 3.169

5.  File formats commonly used in mass spectrometry proteomics.

Authors:  Eric W Deutsch
Journal:  Mol Cell Proteomics       Date:  2012-09-06       Impact factor: 5.911

6.  Assembling proteomics data as a prerequisite for the analysis of large scale experiments.

Authors:  Frank Schmidt; Monika Schmid; Bernd Thiede; Klaus-Peter Pleissner; Martina Böhme; Peter R Jungblut
Journal:  Chem Cent J       Date:  2009-01-23       Impact factor: 4.215

7.  MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.

Authors:  Jürgen Hartler; Gerhard G Thallinger; Gernot Stocker; Alexander Sturn; Thomas R Burkard; Erik Körner; Robert Rader; Andreas Schmidt; Karl Mechtler; Zlatko Trajanoski
Journal:  BMC Bioinformatics       Date:  2007-06-13       Impact factor: 3.169
  7 in total

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