Literature DB >> 15681571

TreeScan: a bioinformatic application to search for genotype/phenotype associations using haplotype trees.

David Posada1, Taylor J Maxwell, Alan R Templeton.   

Abstract

SUMMARY: We present the software implementation of the tree scanning method to detect associations between genetic haplotypes and quantitative traits, utilizing the evolutionary history of the haplotypes, in samples of unrelated individuals. AVAILABILITY: The program is available free of charge, under the GNU General Public License. A package including C source code, a Makefile, and Windows (DOS) and Macintosh binaries, can be downloaded from http://darwin.uvigo.es

Mesh：

Year:  2005        PMID： 15681571     DOI： 10.1093/bioinformatics/bti293

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  12 in total

1.  Nested clade analysis: an extensively validated method for strong phylogeographic inference.

Authors:  Alan R Templeton
Journal:  Mol Ecol       Date:  2008-03-10       Impact factor: 6.185

2.  Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley.

Authors:  Aaron J Lorenz; Martha T Hamblin; Jean-Luc Jannink
Journal:  PLoS One       Date:  2010-11-22       Impact factor: 3.240

3.  Application of statistical and functional methodologies for the investigation of genetic determinants of coronary heart disease biomarkers: lipoprotein lipase genotype and plasma triglycerides as an exemplar.

Authors:  Andrew J P Smith; Jutta Palmen; Wendy Putt; Philippa J Talmud; Steve E Humphries; Fotios Drenos
Journal:  Hum Mol Genet       Date:  2010-07-22       Impact factor: 6.150

4.  Mitochondrial genomic analysis of late onset Alzheimer's disease reveals protective haplogroups H6A1A/H6A1B: the Cache County Study on Memory in Aging.

Authors:  Perry G Ridge; Taylor J Maxwell; Christopher D Corcoran; Maria C Norton; Joann T Tschanz; Elizabeth O'Brien; Richard A Kerber; Richard M Cawthon; Ronald G Munger; John S K Kauwe
Journal:  PLoS One       Date:  2012-09-17       Impact factor: 3.240

5.  Association study between the gibberellic acid insensitive gene and leaf length in a Lolium perenne L. synthetic variety.

Authors:  Jérôme Auzanneau; Christian Huyghe; Abraham J Escobar-Gutiérrez; Bernadette Julier; François Gastal; Philippe Barre
Journal:  BMC Plant Biol       Date:  2011-12-28       Impact factor: 4.215

6.  On the relationship between an Asian haplotype on chromosome 6 that reduces androstenone levels in boars and the differential expression of SULT2A1 in the testis.

Authors:  André M Hidalgo; John W M Bastiaansen; Barbara Harlizius; Hendrik-Jan Megens; Ole Madsen; Richard P M A Crooijmans; Martien A M Groenen
Journal:  BMC Genet       Date:  2014-01-09       Impact factor: 2.797

7.  Cis sequence effects on gene expression.

Authors:  Andrew W Bergen; Andrea Baccarelli; Timothy K McDaniel; Kenneth Kuhn; Ruth Pfeiffer; Jerry Kakol; Patrick Bender; Kevin Jacobs; Bernice Packer; Stephen J Chanock; Meredith Yeager
Journal:  BMC Genomics       Date:  2007-08-29       Impact factor: 3.969

8.  Mitochondrial haplotypes associated with biomarkers for Alzheimer's disease.

Authors:  Perry G Ridge; Andre Koop; Taylor J Maxwell; Matthew H Bailey; Russell H Swerdlow; John S K Kauwe; Robyn A Honea
Journal:  PLoS One       Date:  2013-09-11       Impact factor: 3.240

9.  Common genetic variants of the human steroid 21-hydroxylase gene (CYP21A2) are related to differences in circulating hormone levels.

Authors:  Márton Doleschall; Julianna Anna Szabó; Júlia Pázmándi; Ágnes Szilágyi; Klára Koncz; Henriette Farkas; Miklós Tóth; Péter Igaz; Edit Gláz; Zoltán Prohászka; Márta Korbonits; Károly Rácz; George Füst; Attila Patócs
Journal:  PLoS One       Date:  2014-09-11       Impact factor: 3.240

10.  Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging.

Authors:  Perry G Ridge; Taylor J Maxwell; Spencer J Foutz; Matthew H Bailey; Christopher D Corcoran; JoAnn T Tschanz; Maria C Norton; Ronald G Munger; Elizabeth O'Brien; Richard A Kerber; Richard M Cawthon; John S K Kauwe
Journal:  BMC Bioinformatics       Date:  2014-05-28       Impact factor: 3.169
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