Literature DB >> 15680510

Relative rates of gene fusion and fission in multi-domain proteins.

Sarah K Kummerfeld1, Sarah A Teichmann.   

Abstract

During evolution genes can produce more complex proteins by gene fusion or less complex proteins by gene fission. Considering proteins from 131 completely sequenced genomes from all three kingdoms of life, we identified 2869 groups of multi-domain proteins as a single protein in certain organisms and as two or more smaller proteins with equivalent domain architectures in other organisms. We found that fusion events are approximately four times more common than fission events, and we established that, in most cases, any particular fusion or fission event only occurred once during the course of evolution.

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Year:  2005        PMID: 15680510     DOI: 10.1016/j.tig.2004.11.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  79 in total

1.  Evolution and structural diversification of Nictaba-like lectin genes in food crops with a focus on soybean (Glycine max).

Authors:  Sofie Van Holle; Pierre Rougé; Els J M Van Damme
Journal:  Ann Bot       Date:  2017-03-01       Impact factor: 4.357

2.  Modeling the evolution of protein domain architectures using maximum parsimony.

Authors:  Jessica H Fong; Lewis Y Geer; Anna R Panchenko; Stephen H Bryant
Journal:  J Mol Biol       Date:  2006-11-10       Impact factor: 5.469

Review 3.  Nothing about protein structure classification makes sense except in the light of evolution.

Authors:  Ruben E Valas; Song Yang; Philip E Bourne
Journal:  Curr Opin Struct Biol       Date:  2009-04-24       Impact factor: 6.809

4.  The architectural design of networks of protein domain architectures.

Authors:  Chia-Hsin Hsu; Chien-Kuo Chen; Ming-Jing Hwang
Journal:  Biol Lett       Date:  2013-06-12       Impact factor: 3.703

5.  The proteosomal degradation of fusion proteins cannot be predicted from the proteosome susceptibility of their individual components.

Authors:  Petr O Ilyinskii; Anatoli B Meriin; Vladimir L Gabai; Evgeny V Usachev; Alexei G Prilipov; Galini Thoidis; Alexander M Shneider
Journal:  Protein Sci       Date:  2008-04-14       Impact factor: 6.725

6.  Conserved evolutionary units in the heme-copper oxidase superfamily revealed by novel homologous protein families.

Authors:  Jimin Pei; Wenlin Li; Lisa N Kinch; Nick V Grishin
Journal:  Protein Sci       Date:  2014-07-07       Impact factor: 6.725

7.  CODA: accurate detection of functional associations between proteins in eukaryotic genomes using domain fusion.

Authors:  Adam J Reid; Juan A G Ranea; Andrew B Clegg; Christine A Orengo
Journal:  PLoS One       Date:  2010-06-01       Impact factor: 3.240

8.  The compartmentalized bacteria of the planctomycetes-verrucomicrobia-chlamydiae superphylum have membrane coat-like proteins.

Authors:  Rachel Santarella-Mellwig; Josef Franke; Andreas Jaedicke; Mátyás Gorjánácz; Ulrike Bauer; Aidan Budd; Iain W Mattaj; Damien P Devos
Journal:  PLoS Biol       Date:  2010-01-19       Impact factor: 8.029

9.  The evolutionary history of protein domains viewed by species phylogeny.

Authors:  Song Yang; Philip E Bourne
Journal:  PLoS One       Date:  2009-12-21       Impact factor: 3.240

10.  Mechanisms of copy number variation and hybrid gene formation in the KIR immune gene complex.

Authors:  James A Traherne; Maureen Martin; Rosemary Ward; Maki Ohashi; Fawnda Pellett; Dafna Gladman; Derek Middleton; Mary Carrington; John Trowsdale
Journal:  Hum Mol Genet       Date:  2009-12-03       Impact factor: 6.150

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