Literature DB >> 15680509

Microeconomic principles explain an optimal genome size in bacteria.

Juan A G Ranea1, Alastair Grant, Janet M Thornton, Christine A Orengo.   

Abstract

Bacteria can clearly enhance their survival by expanding their genetic repertoire. However, the tight packing of the bacterial genome and the fact that the most evolved species do not necessarily have the biggest genomes suggest there are other evolutionary factors limiting their genome expansion. To clarify these restrictions on size, we studied those protein families contributing most significantly to bacterial-genome complexity. We found that all bacteria apply the same basic and ancestral 'molecular technology' to optimize their reproductive efficiency. The same microeconomics principles that define the optimum size in a factory can also explain the existence of a statistical optimum in bacterial genome size. This optimum is reached when the bacterial genome obtains the maximum metabolic complexity (revenue) for minimal regulatory genes (logistic cost).

Mesh:

Year:  2005        PMID: 15680509     DOI: 10.1016/j.tig.2004.11.014

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  21 in total

1.  Protein superfamily evolution and the last universal common ancestor (LUCA).

Authors:  Juan A G Ranea; Antonio Sillero; Janet M Thornton; Christine A Orengo
Journal:  J Mol Evol       Date:  2006-10-04       Impact factor: 2.395

Review 2.  Exploiting protein structure data to explore the evolution of protein function and biological complexity.

Authors:  Russell L Marsden; Juan A G Ranea; Antonio Sillero; Oliver Redfern; Corin Yeats; Michael Maibaum; David Lee; Sarah Addou; Gabrielle A Reeves; Timothy J Dallman; Christine A Orengo
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

3.  Letting go: bacterial genome reduction solves the dilemma of adapting to predation mortality in a substrate-restricted environment.

Authors:  Michael Baumgartner; Stefan Roffler; Thomas Wicker; Jakob Pernthaler
Journal:  ISME J       Date:  2017-06-06       Impact factor: 10.302

Review 4.  Implications of streamlining theory for microbial ecology.

Authors:  Stephen J Giovannoni; J Cameron Thrash; Ben Temperton
Journal:  ISME J       Date:  2014-04-17       Impact factor: 10.302

5.  Family-specific scaling laws in bacterial genomes.

Authors:  Eleonora De Lazzari; Jacopo Grilli; Sergei Maslov; Marco Cosentino Lagomarsino
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

6.  Darwinian evolution in the light of genomics.

Authors:  Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2009-02-12       Impact factor: 16.971

7.  Translational selection is ubiquitous in prokaryotes.

Authors:  Fran Supek; Nives Skunca; Jelena Repar; Kristian Vlahovicek; Tomislav Smuc
Journal:  PLoS Genet       Date:  2010-06-24       Impact factor: 5.917

Review 8.  Genomic repertoires of DNA-binding transcription factors across the tree of life.

Authors:  Varodom Charoensawan; Derek Wilson; Sarah A Teichmann
Journal:  Nucleic Acids Res       Date:  2010-07-30       Impact factor: 16.971

Review 9.  Reduced genome size of Helicobacter pylori originating from East Asia.

Authors:  Quan-Jiang Dong; Li-Li Wang; Zi-Bing Tian; Xin-Jun Yu; Sheng-Jiao Jia; Shi-Ying Xuan
Journal:  World J Gastroenterol       Date:  2014-05-21       Impact factor: 5.742

10.  On the need for widespread horizontal gene transfers under genome size constraint.

Authors:  Hervé Isambert; Richard R Stein
Journal:  Biol Direct       Date:  2009-08-25       Impact factor: 4.540

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