Literature DB >> 15669821

Solvent deuterium isotope effects on phosphodiester cleavage catalyzed by an extraordinarily active Zn(II) complex.

Meng-Yin Yang1, Olga Iranzo, John P Richard, Janet R Morrow.   

Abstract

The effect of increasing pL on the extraordinary catalytic activity of a dinuclear Zn2+ complex toward cleavage of uridine 3'-4-nitrophenyl phosphate (UpPNP) in H2O and D2O was determined. This change from H2O to D2O causes an increase from 7.8 to 8.4 in the apparent pKa of a catalytic functional group, but has little effect on the activity of the active form of the catalyst toward cleavage of UpPNP, so that there is no primary kinetic SDIE on the cleavage reaction from movement of a proton at the rate-determining transition state. It is concluded that essentially all of the rate acceleration for this catalyst is due to electrostatic stabilization of the transition state by interactions between opposing cationic and anionic charges.

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Year:  2005        PMID: 15669821     DOI: 10.1021/ja044617i

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Altered transition state for the reaction of an RNA model catalyzed by a dinuclear zinc(II) catalyst.

Authors:  Tim Humphry; Subashree Iyer; Olga Iranzo; Janet R Morrow; John P Richard; Piotr Paneth; Alvan C Hengge
Journal:  J Am Chem Soc       Date:  2008-12-31       Impact factor: 15.419

2.  Kinetic isotope effects for RNA cleavage by 2'-O- transphosphorylation: nucleophilic activation by specific base.

Authors:  Michael E Harris; Qing Dai; Hong Gu; Daniel L Kellerman; Joseph A Piccirilli; Vernon E Anderson
Journal:  J Am Chem Soc       Date:  2010-08-25       Impact factor: 15.419

3.  Phosphate binding energy and catalysis by small and large molecules.

Authors:  Janet R Morrow; Tina L Amyes; John P Richard
Journal:  Acc Chem Res       Date:  2008-02-23       Impact factor: 22.384

Review 4.  Identification of catalytic metal ion ligands in ribozymes.

Authors:  John K Frederiksen; Joseph A Piccirilli
Journal:  Methods       Date:  2009-08-03       Impact factor: 3.608

Review 5.  Mechanistic Studies of Homo- and Heterodinuclear Zinc Phosphoesterase Mimics: What Has Been Learned?

Authors:  Andrea Erxleben
Journal:  Front Chem       Date:  2019-02-21       Impact factor: 5.221

Review 6.  Phosphodiester models for cleavage of nucleic acids.

Authors:  Satu Mikkola; Tuomas Lönnberg; Harri Lönnberg
Journal:  Beilstein J Org Chem       Date:  2018-04-10       Impact factor: 2.883

7.  Protein Flexibility and Stiffness Enable Efficient Enzymatic Catalysis.

Authors:  John P Richard
Journal:  J Am Chem Soc       Date:  2019-02-14       Impact factor: 15.419

  7 in total

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