Literature DB >> 15667218

Apparent Debye-Huckel electrostatic effects in the folding of a simple, single domain protein.

Miguel A de Los Rios1, Kevin W Plaxco.   

Abstract

We have monitored the effects of salts and denaturants on the folding of the simple, two-state protein FynSH3. As predicted by Debye-Huckel limiting law, both the stability and (log) folding rate of FynSH3 increase nearly perfectly linearly (r(2)> 0.99) with the square root of ionic strength upon increasing concentrations of the relatively nonchaotropic salt sodium chloride. The stability of FynSH3 is also linear in square root ionic strength when the relatively nonchaotropic salts sodium bromide, potassium bromide, and potassium chloride are employed. Comparison of the kinetic and equilibrium effects of sodium chloride suggests that the electrostatic interactions formed in the folding transition state are approximately 50% as destabilizing as those formed in the native state, presumably reflecting the more compact nature of the latter. In contrast, the relationship between concentration and folding kinetics is more complex when the highly chaotropic salt guanidine hydrochloride (GuHCl) is employed. At moderate to high GuHCl concentrations the net effect of the linear, presumably chaotrope-induced deceleration and the presumed, square root-dependent ionic strength-induced acceleration is well approximated as linear, thus accounting for the observation of "chevron behavior" (log folding rate linear in denaturant concentration) typically reported for the folding of single domain proteins. At very low GuHCl concentrations, however, significant kinetic rollover is observed. This rollover is reasonably well fitted as a sum of a linear, presumably chaotropic effect and a square root-dependent, presumably electrostatic effect. These results thus not only provide insight into the nature of the folding transition state but also suggest that caution is in order when extrapolating GuHCl-based chevrons to estimate folding rates in the absence of denaturant and in interpreting deviations from chevron linearity as evidence for non-two-state kinetics.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15667218     DOI: 10.1021/bi048444l

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins.

Authors:  Karen L Maxwell; David Wildes; Arash Zarrine-Afsar; Miguel A De Los Rios; Andrew G Brown; Claire T Friel; Linda Hedberg; Jia-Cherng Horng; Diane Bona; Erik J Miller; Alexis Vallée-Bélisle; Ewan R G Main; Francesco Bemporad; Linlin Qiu; Kaare Teilum; Ngoc-Diep Vu; Aled M Edwards; Ingo Ruczinski; Flemming M Poulsen; Birthe B Kragelund; Stephen W Michnick; Fabrizio Chiti; Yawen Bai; Stephen J Hagen; Luis Serrano; Mikael Oliveberg; Daniel P Raleigh; Pernilla Wittung-Stafshede; Sheena E Radford; Sophie E Jackson; Tobin R Sosnick; Susan Marqusee; Alan R Davidson; Kevin W Plaxco
Journal:  Protein Sci       Date:  2005-02-02       Impact factor: 6.725

2.  Protein stabilization by specific binding of guanidinium to a functional arginine-binding surface on an SH3 domain.

Authors:  Arash Zarrine-Afsar; Anthony Mittermaier; Lewis E Kay; Alan R Davidson
Journal:  Protein Sci       Date:  2006-01       Impact factor: 6.725

3.  Role of a conserved salt bridge between the PAS core and the N-terminal domain in the activation of the photoreceptor photoactive yellow protein.

Authors:  Daniel Hoersch; Harald Otto; Chandra P Joshi; Berthold Borucki; Michael A Cusanovich; Maarten P Heyn
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

4.  A comparison of the folding kinetics of a small, artificially selected DNA aptamer with those of equivalently simple naturally occurring proteins.

Authors:  Camille Lawrence; Alexis Vallée-Bélisle; Shawn H Pfeil; Derek de Mornay; Everett A Lipman; Kevin W Plaxco
Journal:  Protein Sci       Date:  2013-11-28       Impact factor: 6.725

5.  Role of conserved salt bridges in homeodomain stability and DNA binding.

Authors:  Mario Torrado; Julia Revuelta; Carlos Gonzalez; Francisco Corzana; Agatha Bastida; Juan Luis Asensio
Journal:  J Biol Chem       Date:  2009-06-26       Impact factor: 5.157

6.  Thermodynamics, kinetics, and salt dependence of folding of YopM, a large leucine-rich repeat protein.

Authors:  Ellen Kloss; Doug Barrick
Journal:  J Mol Biol       Date:  2008-09-04       Impact factor: 5.469

7.  Modulation of folding energy landscape by charge-charge interactions: linking experiments with computational modeling.

Authors:  Franco O Tzul; Katrina L Schweiker; George I Makhatadze
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-06       Impact factor: 11.205

8.  Electrostatics, structure prediction, and the energy landscapes for protein folding and binding.

Authors:  Min-Yeh Tsai; Weihua Zheng; D Balamurugan; Nicholas P Schafer; Bobby L Kim; Margaret S Cheung; Peter G Wolynes
Journal:  Protein Sci       Date:  2015-08-08       Impact factor: 6.725

9.  On the precision of experimentally determined protein folding rates and phi-values.

Authors:  Miguel A de los Rios; B K Muralidhara; David Wildes; Tobin R Sosnick; Susan Marqusee; Pernilla Wittung-Stafshede; Kevin W Plaxco; Ingo Ruczinski
Journal:  Protein Sci       Date:  2006-03       Impact factor: 6.725

10.  Entropic and electrostatic effects on the folding free energy of a surface-attached biomolecule: an experimental and theoretical study.

Authors:  Herschel M Watkins; Alexis Vallée-Bélisle; Francesco Ricci; Dmitrii E Makarov; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2012-01-17       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.