Literature DB >> 15664887

Protein structural transitions and their functional role.

Martin Karplus1, Yi Qin Gao, Jianpeng Ma, Arjan van der Vaart, Wei Yang.   

Abstract

Living cells are a collection of molecular machines which carry out many of the functions essential for the cell's existence, differentiation and reproduction. Most, though not all, of these machines are made up of proteins. Because of their complexity, an understanding of how they work requires a synergistic combination of experimental and theoretical studies. In this paper we outline our studies of two such protein machines. One is GroEL, the chaperone from Escherichia coli, which aids in protein folding; the other is F(1)-ATPase, a motor protein which synthesizes and hydrolyses ATP.

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Year:  2005        PMID: 15664887     DOI: 10.1098/rsta.2004.1496

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  18 in total

1.  Visualizing transient protein-folding intermediates by tryptophan-scanning mutagenesis.

Authors:  Alexis Vallée-Bélisle; Stephen W Michnick
Journal:  Nat Struct Mol Biol       Date:  2012-06-10       Impact factor: 15.369

2.  Out-of-equilibrium conformational cycling of GroEL under saturating ATP concentrations.

Authors:  Gabriel A Frank; Mila Goomanovsky; Amit Davidi; Guy Ziv; Amnon Horovitz; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

Review 3.  Biomolecular simulation and modelling: status, progress and prospects.

Authors:  Marc W van der Kamp; Katherine E Shaw; Christopher J Woods; Adrian J Mulholland
Journal:  J R Soc Interface       Date:  2008-12-06       Impact factor: 4.118

4.  Introduction. Biomolecular simulation.

Authors:  Adrian J Mulholland
Journal:  J R Soc Interface       Date:  2008-12-06       Impact factor: 4.118

5.  Exploring structural variability in X-ray crystallographic models using protein local optimization by torsion-angle sampling.

Authors:  Jennifer L Knight; Zhiyong Zhou; Emilio Gallicchio; Daniel M Himmel; Richard A Friesner; Eddy Arnold; Ronald M Levy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-03-19

6.  Determination of torque generation from the power stroke of Escherichia coli F1-ATPase.

Authors:  Tassilo Hornung; Robert Ishmukhametov; David Spetzler; James Martin; Wayne D Frasch
Journal:  Biochim Biophys Acta       Date:  2008-04-18

7.  Extracting the causality of correlated motions from molecular dynamics simulations.

Authors:  Hiqmet Kamberaj; Arjan van der Vaart
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

8.  Low-temperature molecular dynamics simulations of horse heart cytochrome c and comparison with inelastic neutron scattering data.

Authors:  Wojciech Pulawski; Slawomir Filipek; Anna Zwolinska; Aleksander Debinski; Krystiana Krzysko; Ramón Garduño-Juárez; Sowmya Viswanathan; Venkatesan Renugopalakrishnan
Journal:  Eur Biophys J       Date:  2012-12-08       Impact factor: 1.733

9.  Effects of surface water on protein dynamics studied by a novel coarse-grained normal mode approach.

Authors:  Lei Zhou; Steven A Siegelbaum
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

10.  On the role of protein structural dynamics in the catalytic activity and thermostability of serine protease subtilisin Carlsberg.

Authors:  Miraida Pagán; Ricardo J Solá; Kai Griebenow
Journal:  Biotechnol Bioeng       Date:  2009-05-01       Impact factor: 4.530

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