Literature DB >> 15659374

An avidin-like domain that does not bind biotin is adopted for oligomerization by the extracellular mosaic protein fibropellin.

Itai Yanai1, Yong Yu, Xiahui Zhu, Charles R Cantor, Zhiping Weng.   

Abstract

The protein avidin found in egg white seems optimized for binding the small vitamin biotin as a stable homotetramer. Indeed, along with its streptavidin ortholog in the bacterium Streptomyces avidinii, this protein shows the strongest known noncovalent bond of a protein with a small ligand. A third known member of the avidin family, as similar to avidin as is streptavidin, is found at the C-terminal ends of the multidomain fibropellin proteins found in sea urchin. The fibropellins form a layer known as the apical lamina that surrounds the sea urchin embryo throughout development. Based upon the structure of avidin, we deduced a structural model for the avidin-like domain of the fibropellins and found that computational modeling predicts a lack of biotin binding and the preservation of tetramerization. To test this prediction we expressed and purified the fibropellin avidin-like domain and found it indeed to be a homotetramer incapable of binding biotin. Several lines of evidence suggest that the avidin-like domain causes the entire fibropellin protein to tetramerize. We suggest that the presence of the avidin-like domain serves a structural (tetrameric form) rather than functional (biotin-binding) role and may therefore be a molecular instance of exaptation-the modification of an existing function toward a new function. Finally, based upon the oligomerization of the avidin-like domain, we propose a model for the overall structure of the apical lamina.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15659374      PMCID: PMC2253421          DOI: 10.1110/ps.04898705

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  31 in total

1.  Cn3D: sequence and structure views for Entrez.

Authors:  Y Wang; L Y Geer; C Chappey; J A Kans; S H Bryant
Journal:  Trends Biochem Sci       Date:  2000-06       Impact factor: 13.807

2.  Docking unbound proteins using shape complementarity, desolvation, and electrostatics.

Authors:  Rong Chen; Zhiping Weng
Journal:  Proteins       Date:  2002-05-15

Review 3.  What are oligomerization domains good for?

Authors:  J Engel; R A Kammerer
Journal:  Matrix Biol       Date:  2000-08       Impact factor: 11.583

4.  ZDOCK: an initial-stage protein-docking algorithm.

Authors:  Rong Chen; Li Li; Zhiping Weng
Journal:  Proteins       Date:  2003-07-01

5.  A protein-protein docking benchmark.

Authors:  Rong Chen; Julian Mintseris; Joël Janin; Zhiping Weng
Journal:  Proteins       Date:  2003-07-01

6.  ZDOCK predictions for the CAPRI challenge.

Authors:  Rong Chen; Weiwei Tong; Julian Mintseris; Li Li; Zhiping Weng
Journal:  Proteins       Date:  2003-07-01

7.  A novel shape complementarity scoring function for protein-protein docking.

Authors:  Rong Chen; Zhiping Weng
Journal:  Proteins       Date:  2003-05-15

8.  Avidin and streptavidin.

Authors:  N M Green
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

9.  The apical lamina of the sea urchin embryo: major glycoproteins associated with the hyaline layer.

Authors:  H G Hall; V D Vacquier
Journal:  Dev Biol       Date:  1982-01       Impact factor: 3.582

10.  Mutation of a critical tryptophan to lysine in avidin or streptavidin may explain why sea urchin fibropellin adopts an avidin-like domain.

Authors:  O H Laitinen; K J Airenne; A T Marttila; T Kulik; E Porkka; E A Bayer; M Wilchek; M S Kulomaa
Journal:  FEBS Lett       Date:  1999-11-12       Impact factor: 4.124

View more
  1 in total

1.  Bacterial avidins are a widely distributed protein family in Actinobacteria, Proteobacteria and Bacteroidetes.

Authors:  Olli H Laitinen; Tanja P Kuusela; Sampo Kukkurainen; Anssi Nurminen; Aki Sinkkonen; Vesa P Hytönen
Journal:  BMC Ecol Evol       Date:  2021-04-09
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.